Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi3g04104 ATGACAGGTACAGATAGCCGACGAGAGAAGCTAGCCGGTTTGACACTTAATGACATATTAGCCAATCAAAAAAGACCCGGTTCAATAACGCCAGCCGAACCATCTCCTAAAAGCCGAACCCTCTTTGACATCATCAAAGAAGACCAAACCAACAAAAAAGATCGAAGATCTTGGAAAGCCTTTAAAGACAAGCTTCGGCTGAAGCGCGCAGGCTCGGCTTGGACATCATCAATTCACATTCCAACCTCAGACATTCCCATCCAAAATCCAAACAGCAGAACCTTTTCCCAGCTCGGTCGTCACGACTCAGTCCGAATCCAAACTCACCACGACTCAGACATGACGACAACTCACCAAGTGGACGACCTCGTTCCGCCAGAAGAATCCAACGCTCCAGTTTCCAGACCACAATTCACTCGCAAGAGTTCAACTCGTTTCACGCCAGATTCCCCTGAGAATCCCATCAGTGGAGGAGGACATCTCCGACCGCAACTTTCACGTAAGAATTCCGTCAACATGCCATCGTCGGAGCCTTTTCGAAAAGGCCGTGTGGTGACTTTTCGAGACAGCTTCGACGATGACGAGGATGATGATGATGATGAAACCAAGAAGACGGGTAGGGCATTATCGGCTAGAGAGGCTGTGGCTGCTCAGGAAGCGGCAGAAGCTGCTTCGGAGGAACAAGAGGAGGGTGGGACAGGACAACCGATGATGTCGTTGATGGATTTGTTAGAGGAGACTGATAGAGAAATGGGGTTGGAAGGGGCGAGGTATGTATTAAGTGATGATGAAGATTATTATGATGATGAAGAAGATGAAGATGATGAAAATGGAGGAAGTGCCTTGGAACAAAGTTGTTGTATTTGCATGGTGAAGCATAAGGGTTCTGCTATGGCAGCTTGTGGTCATAGTTTTTGTAGGATGTGTTCCAGGGAGCTTATGGTTGCTAAGGGAAATTGTCCACTTTGTAATAATTTCATTACAGAGATTCTTGATATTTTTTAA 1005 0.4647 MTGTDSRREKLAGLTLNDILANQKRPGSITPAEPSPKSRTLFDIIKEDQTNKKDRRSWKAFKDKLRLKRAGSAWTSSIHIPTSDIPIQNPNSRTFSQLGRHDSVRIQTHHDSDMTTTHQVDDLVPPEESNAPVSRPQFTRKSSTRFTPDSPENPISGGGHLRPQLSRKNSVNMPSSEPFRKGRVVTFRDSFDDDEDDDDDETKKTGRALSAREAVAAQEAAEAASEEQEEGGTGQPMMSLMDLLEETDREMGLEGARYVLSDDEDYYDDEEDEDDENGGSALEQSCCICMVKHKGSAMAACGHSFCRMCSRELMVAKGNCPLCNNFITEILDIF 334
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi3g04104 334 MobiDBLite consensus disorder prediction 132 151 - -
Vivi3g04104 334 MobiDBLite consensus disorder prediction 109 236 - -
Vivi3g04104 334 ProSiteProfiles Zinc finger RING-type profile. 286 324 IPR001841 -
Vivi3g04104 334 SMART ring_2 286 323 IPR001841 -
Vivi3g04104 334 SUPERFAMILY RING/U-box 285 330 - -
Vivi3g04104 334 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 261 334 IPR013083 -
Vivi3g04104 334 MobiDBLite consensus disorder prediction 1 39 - -
Vivi3g04104 334 Pfam Zinc finger, C3HC4 type (RING finger) 283 329 - -
Vivi3g04104 334 PANTHER OS01G0917900 PROTEIN 7 334 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi3g04104 Vivi-Chr3 71852485 71854095 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi3g04104 1 334 C3H Transcription Factor Family AT3G07120 37.701 1.40e-55 183
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi3g04104 - - gmx:100795449 371.703