Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi3g04082 ATGAAGAGAGATCGCCAAGAAACCTCTGCTGGAGGAGGTGTGAATAGCAACAACAACAACAATAGCAATAGCAGCATCAGCAACAACATTAGCAACAACTTTGTTAGTGTACGAGGTGAATCTTCATCAATGCAGAACAACAGCTTCAACAGCACAAACGGGAAACAAAGTTTGTGGAGGGAAGAAAAAGAAAACAGTGGCGGAATGGACGAGTTACTAGCGGCATTAGGTTACAAGGTTCGTTCTTCAGACATGCTTGACGTTGCTCAAAAGCTTGAACAGCTTGAGATGGTGATGGGTAGTGCTCAAGAAGAAGGAATCAACCACCTCGCTTCAGATACTGTTCACTACGACCCTACCGATCTATACTCATGGGTTCAAACCATGCTCACTGAACTCAACCCTTCCACCGATTCACAAATCAATGACCCTTTAGACGCTTCTTCTTCCATCTTCAACGATAACTCCCAGTATGATCTCAGTGTCATTCCTGGAATGGCCGCGTACCCACCTCAAAGCGTTACCCAGAACAACGAAAGCGAGGATTCTAACAGCAACAAGAGATTGAGGACATGGGGGAGTGAAACGGAGTCGGAAGATATTTTTCTGCCGGCGGTGGCGTTGTCTCCGCCGGCGGAGACTACGAGACCGGTGGTTCTCGTTGACTCGCAGGAAACTGGGGTTCATCTTATTCACACTATGATGGCATGCGCTGATGCGATTCAGCGTGATGATCTCAAGATTGCTGATAGACTGGTGAAGAATATTGGGATATTGGCTTCGTCGCAAACCGGAGCGATGGGGAAAGTCGCTTCGTATTTCGCACAAGCTCTCTATCGGAGAATCTACAGAGTTTCACCAGATGAAACTCTGGATTCGTCTTTATCTGATGCTCTTCACATGCACTTTTATGAGTCTTCTCCTTATCTGAAATTCGCTCACTTCACAGCGAATCAAGCTATTCTGGAAGCTTTTGCCGGTGCCGGAAGTGTTCACGTTATTGATTTTGGTCTCAAACAAGGGATGCAGTGGCCGGCGCTTATGCAAGCACTTGCATTACGTCCCGGTGGTCCACCAATTTTCCGGTTAACCGGAATCGGGCCACCGCAGACGGGTAACACCGATGCTTTACAGCAGGTGGGTTGGAAATTGGCTCAGCTTGCTCAGACCATTGGTGTTCAGTTCGAGTTTCGTGGATTCGTTTGCAGCAGTCTCGCGGATCTTGACCCGAATATGCTCGAGATCCGACCCGGTGAAGCTGTTGCTGTTAACTCTGTTTTCGAACTTCATACCATGTTGGCCCGACCCGGTTCCATTGATAGGGTTCTCAACACTGTTAAGAAGATTAACCCTAAGATTGTGACTATCGTGGAGCAAGAAGCGAATCACAATGGACCGGTTTTCATGGACCGGTTCACGGAGGCTCTGCATTATTACTCGAGTTTATTTGATTCTCTGGAGGGTTCTTCTAATTCGAACCAACCCGGGTCTGGTTCTTCGAGTCAGGATCTGTTGATGTCGGAGCTTTACTTGGGGAGGCAGATATGCAACGTGGTGGCTTATGAAGGTGTGGACCGAGTCGAGAGACACGAGACATTGACTCAGTGGAGGTCGAGAATGGGTTCAGCTGGATTCGACCCGGTTCATTTAGGTTCAAACGCGTTTAAGCAAGCGAGTACTCTGTTGGCTTTGTTCGCCGGCGGTGATGGGTATAGGGTGGAGGAGAATAACGGGTGTCTTATGCTAGGGTGGCACACGAGGTCACTCATTGCTACCTCCGCGTGGAAGCTTCCACTCATTGAGTCCAAGTGA 1812 0.4845 MKRDRQETSAGGGVNSNNNNNSNSSISNNISNNFVSVRGESSSMQNNSFNSTNGKQSLWREEKENSGGMDELLAALGYKVRSSDMLDVAQKLEQLEMVMGSAQEEGINHLASDTVHYDPTDLYSWVQTMLTELNPSTDSQINDPLDASSSIFNDNSQYDLSVIPGMAAYPPQSVTQNNESEDSNSNKRLRTWGSETESEDIFLPAVALSPPAETTRPVVLVDSQETGVHLIHTMMACADAIQRDDLKIADRLVKNIGILASSQTGAMGKVASYFAQALYRRIYRVSPDETLDSSLSDALHMHFYESSPYLKFAHFTANQAILEAFAGAGSVHVIDFGLKQGMQWPALMQALALRPGGPPIFRLTGIGPPQTGNTDALQQVGWKLAQLAQTIGVQFEFRGFVCSSLADLDPNMLEIRPGEAVAVNSVFELHTMLARPGSIDRVLNTVKKINPKIVTIVEQEANHNGPVFMDRFTEALHYYSSLFDSLEGSSNSNQPGSGSSSQDLLMSELYLGRQICNVVAYEGVDRVERHETLTQWRSRMGSAGFDPVHLGSNAFKQASTLLALFAGGDGYRVEENNGCLMLGWHTRSLIATSAWKLPLIESK 603
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi3g04082 603 Coils Coil 85 105 - -
Vivi3g04082 603 Pfam Transcriptional regulator DELLA protein N terminal 70 137 IPR021914 -
Vivi3g04082 603 Gene3D - 68 133 IPR038088 -
Vivi3g04082 603 SMART DELLA_2 70 143 - -
Vivi3g04082 603 MobiDBLite consensus disorder prediction 9 56 - -
Vivi3g04082 603 MobiDBLite consensus disorder prediction 1 64 - -
Vivi3g04082 603 FunFam DELLA protein GAI 68 133 - -
Vivi3g04082 603 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 167 592 IPR005202 -
Vivi3g04082 603 MobiDBLite consensus disorder prediction 169 188 - -
Vivi3g04082 603 ProSiteProfiles GRAS family profile. 221 596 IPR005202 -
Vivi3g04082 603 Pfam GRAS domain family 230 596 IPR005202 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi3g04082 Vivi-Chr3 71198291 71200596 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi3g04082 55 597 GRAS Transcription Factor Family AT1G14920 59.964 0.0 666
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Vivi3g04082 GRAS 8.8e-136 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi3g04082 K14494 - gmx:100799695 834.328