Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi3g04077 ATGGAGAATTTGCTGGGATTGCTCAAAATTCATGTTCAAAGAGGAGTTAATCTTGCTGTCAGAGATGTTAAAAGCAGTGATCCTTATGTTGTCATCAAAATGGGAAAACAGAAGCTGAAGACTAGGGTAGTGAAAAAGAATGTAAATCCAGAGTGGAATGAAGACTTGACTTTATCAATTTCAGATCCTAAAATTCCAATCCATCTGCATGTGTACGATAAGGACACATTCAGCTTGGATGACAAAATGGGGGACGCGGAGTTTGACATAGGTCCATTTATTGAAGCCATAAAGATGCGGTTGGAAGGTCTTCCGAACGAGACTATAGTTACAAAGGTGGTGCCTAGCAGACAAAATTGTTTAGCAGAAGAGAGTCGCGTTGTTTGGAAAGATGGCAAGGTTTTCCAAAACATGGTTCTTAGACTAAGAAATGTTGAATGTGGGGAAGTTGAGCTTCAGTTGCACTGGGTTGATATTCCAGGTTCAAGGGGAATATAG 498 0.4036 MENLLGLLKIHVQRGVNLAVRDVKSSDPYVVIKMGKQKLKTRVVKKNVNPEWNEDLTLSISDPKIPIHLHVYDKDTFSLDDKMGDAEFDIGPFIEAIKMRLEGLPNETIVTKVVPSRQNCLAEESRVVWKDGKVFQNMVLRLRNVECGEVELQLHWVDIPGSRGI 165
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi3g04077 165 ProSiteProfiles C2 domain profile. 1 103 IPR000008 -
Vivi3g04077 165 SMART C2_3c 7 102 IPR000008 -
Vivi3g04077 165 CDD C2_ArfGAP 5 148 - -
Vivi3g04077 165 Gene3D C2 domain 3 163 IPR035892 -
Vivi3g04077 165 PANTHER PROTEIN C2-DOMAIN ABA-RELATED 4 3 163 IPR044562 -
Vivi3g04077 165 Pfam C2 domain 7 92 IPR000008 -
Vivi3g04077 165 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 6 146 IPR035892 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi3g04077 Vivi-Chr3 71087739 71089568 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi3g04077 38 165 C2H2 Transcription Factor Family AT1G70790 59.231 4.50e-52 161
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi3g04077 - - gmx:100793531 291.967
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi3g04077 3 71087739 71089568 Vivi4g00356 4 7913352 7914809 ECH
Vivi3g04077 3 71087739 71089568 Vivi3g04077 3 71087739 71089568 ECH
Vivi5g03798 5 131974887 131975960 Vivi3g04077 3 71087739 71089568 ECH
Vivi4g04523 4 172535236 172537820 Vivi3g04077 3 71087739 71089568 ECH