Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi3g04075 ATGATCTGGGAGTTGGGTTTTTCATGTCTAGGTAGTAACCGTTCAACTTCAAGGAAGAACTTGACTCATGAACAAACCAACGAAAATGATCACAAAACGACAACTTTGGAGCACAACAAGGCATGGTTGTTGGCCGAGTCTGGTGGGTGTGGACCAGAGTTGAACAATGCTGACCCTCAATCTGTTCACTCTTCTTTTAGGTTCAGTTTTTATTCTCAGGTGGAGCTGGAGTCTTTGAACTTGAGTTCTTCTACTGCTGCTACTGTTTTGATGGTGAATTTGGATAATGGGGTTACGGAATCTCGTGCTAAGGAGTTGAAGTTGAGGAGAGTTGAGTCTTTGGAGAAGACTATTTCTCCTGTTGCTCACTCTTTGATTAGGTTTAGTTTTGCTGAAATTGTTTCTGCTACTAGGAATTTCTCCAAAGGTAGGGTGTTGGGGAGAGGGGCGTTGAGCTGTGTTTTTAGGGGAAGAGTTGGTTTTTTGAGAACGGCGGTAGCGATTAAGCAGTTGGACAAGGAAGATAAGGAATCTGCAAAGGCTTTTTGTAGAGAATTGATGATTGCTAGTTCTCTTCATAGTTCGAATGTTGTTCCGCTTGTTGGTTTTTGTATTGACTCTGAGGAGGGTTTGTTTTTGGTTTACAAGTATGTCTCGGGTGGAAGCTTGGAGCGACACTTGCATGGGAGGAAGAAAGGTGGGAAGGGTAGTTCAACACTTCCATGGTCTGTGAGGTACAAGGTTGCAATTGGGATTGCAGAAGCTATAGCTTATCTGCATAATGGAACTGAAAGATGTGTTGTTCATCGAGACATTAAGCCCTCTAACATTCTGCTTTCTTCAAAGAAGACTCCCAAGTTATGTGATTTCGGATTAGCTACTTGGACTTCTGCGCCTTCGGTTCCTTTCCTTTGCAAAACCGTCAAAGGAACATTTGGATATTTGGCTCCCGAGTATTTCCAACACGGGAAAGTATCGGATAAGACTGATGTTTATGCTTTTGGAGTGGTTTTATTGGAACTCATTACTGGACGAAAACCAATTGAAATGAAAAGATCTCCAGGAGAAGAGAATCTAGTCTTATGGGCTAAACCTTATCTGCAAAAGGGGAAAGGAGCAATTGAAGAGTTGCTTGATCCTCAGCTCAAGTGCAATTTGAGATACTCAAATCAAATCGGTAGAATGATTGACGCAGCAGCTGTTTGTGTCACATCTGAAGAATCTAGGAGACCTGGCATTCGTGAGATTATTGCAATACTGAAAGGTGAAGAAGAACCTGTTTTCTCTAAAAGAAGAAAGTCGAGTTTTCTTGGAAACGGATGCGTGATGGATTGTTATTCTCAGTTACAACAATCAAACAGCGAGATCAAAAGTCACTTGGCTTTGGCAATGCTAGGAGTTTCAGAGTTTGAGGATGATGATTATCTCTATGTATGTTAA 1440 0.4174 MIWELGFSCLGSNRSTSRKNLTHEQTNENDHKTTTLEHNKAWLLAESGGCGPELNNADPQSVHSSFRFSFYSQVELESLNLSSSTAATVLMVNLDNGVTESRAKELKLRRVESLEKTISPVAHSLIRFSFAEIVSATRNFSKGRVLGRGALSCVFRGRVGFLRTAVAIKQLDKEDKESAKAFCRELMIASSLHSSNVVPLVGFCIDSEEGLFLVYKYVSGGSLERHLHGRKKGGKGSSTLPWSVRYKVAIGIAEAIAYLHNGTERCVVHRDIKPSNILLSSKKTPKLCDFGLATWTSAPSVPFLCKTVKGTFGYLAPEYFQHGKVSDKTDVYAFGVVLLELITGRKPIEMKRSPGEENLVLWAKPYLQKGKGAIEELLDPQLKCNLRYSNQIGRMIDAAAVCVTSEESRRPGIREIIAILKGEEEPVFSKRRKSSFLGNGCVMDCYSQLQQSNSEIKSHLALAMLGVSEFEDDDYLYVC 479
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi3g04075 479 ProSitePatterns Serine/Threonine protein kinases active-site signature. 267 279 IPR008271 GO:0004672|GO:0006468
Vivi3g04075 479 ProSiteProfiles Protein kinase domain profile. 140 428 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi3g04075 479 PANTHER OS08G0249100 PROTEIN 41 436 IPR046958 -
Vivi3g04075 479 Pfam Protein kinase domain 141 417 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi3g04075 479 SMART serkin_6 140 428 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi3g04075 479 Gene3D Phosphorylase Kinase; domain 1 99 217 - -
Vivi3g04075 479 Gene3D Transferase(Phosphotransferase) domain 1 218 435 - -
Vivi3g04075 479 FunFam probable serine/threonine-protein kinase PBL7 101 217 - -
Vivi3g04075 479 SUPERFAMILY Protein kinase-like (PK-like) 120 420 IPR011009 -
Vivi3g04075 479 FunFam Putative receptor-like serine/threonine-protein kinase 218 436 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi3g04075 Vivi-Chr3 71046440 71049402 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi3g04075 128 423 Trihelix Transcription Factor Family AT1G70460 41.946 8.67e-69 231
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VI Vivi3g04075 Pkinase 4.5e-44 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi3g04075 - - psat:127083811 921.768