Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi3g04073 ATGGACACTCCTCATTCTCCTTCCTCCTGTTCCTCTTCCTCCTCCTCCTCCACCTATTCATGGGAACCACATGCTACCGACACAATCAATCTTGAACCGGAAGAACCACAAACACCGTTAGCCGTTCGGCGCGCTCTCCAGCTTCTCAAATCCGGCTTACCAGAATTACGGCTTCAAGCCGCTCGCGACATCCGGAAACTCACGAAAACCTCCCAGCGGTGTCGGCGCCAGCTCTCTGAATCTGTCGGTCCACTCGTTGATATGCTCCGAGTCGACTCAGACGAGTCGCATGAACCCGCGCTTCTCGCTTTGCTTAATCTTGCCGTCAAAGATGAAAAGAATAAAATCAAAATTGTGGAGGCCGGAGCATTAGAACCAATACTTAGTTTTCTCAAGTCACAAAATCCAAATCTTCAGGCGTCTGCAACTGCAGCTTTGCTCACACTATCTGCTTCTTCAACCAACAAACCAATTATTAGTGCTTGTGGTGCTATTCCCCTTCTTGTGGAGATTCTTAGAGACGGGAGCCCACAGGCGAAAGCTGATGCAGTAATGGCTCTCTCAAATTTATCAACATACCCTAATAATCTTAAGATTATTCTCGAAACAAATCCAATCCCTTTCATAGTTGATATCCTCAAAACTTGCAAAAAGTCCTCAAAAACAGCTGAAAAATGCTGTGCTTTGATAGAACCTTTAGTGGACTATGATGAATGCAGAACTGTCTTGACATCTGAGGAAGGTGGGATTCTTGCAGTTGTGGAGGTTCTCGAAAACGGAACTCTCCAAAGCAGGGAGCATGCCGTTGGAACACTATTGACACTGTGCCAAAGCGATCGATGTAAATACAGGGAACCGATTCTTAGAGAAGGTGTCATTCCAGGATTACTTGAGCTCACTGTTCAAGGAACACCGAAGTCTCAGATAAAAGCGCGCACCCTCTTGCAACTTCTAAGAGAATCTCCTTATCCAAGATCTGAAATTCAACCTGACACTCTTGAGAATATAGTATGCAACATCATATCTCAGATTGACGGGGACGATCAATCTGGTAAAGCAAAGAAGATGCTGGCTGAGATGGTTCAAGTCAGCATGGAACAGAGTCTGAGACATTTACAGCAAAGGGCACTCGTGTGCACCCCGAGTGATCTTCCTATAGCTGGCGCTTCTGAAGTTTCTTTTAAGTAA 1188 0.4571 MDTPHSPSSCSSSSSSSTYSWEPHATDTINLEPEEPQTPLAVRRALQLLKSGLPELRLQAARDIRKLTKTSQRCRRQLSESVGPLVDMLRVDSDESHEPALLALLNLAVKDEKNKIKIVEAGALEPILSFLKSQNPNLQASATAALLTLSASSTNKPIISACGAIPLLVEILRDGSPQAKADAVMALSNLSTYPNNLKIILETNPIPFIVDILKTCKKSSKTAEKCCALIEPLVDYDECRTVLTSEEGGILAVVEVLENGTLQSREHAVGTLLTLCQSDRCKYREPILREGVIPGLLELTVQGTPKSQIKARTLLQLLRESPYPRSEIQPDTLENIVCNIISQIDGDDQSGKAKKMLAEMVQVSMEQSLRHLQQRALVCTPSDLPIAGASEVSFK 395
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi3g04073 395 SMART arm_5 152 192 IPR000225 GO:0005515
Vivi3g04073 395 SMART arm_5 70 109 IPR000225 GO:0005515
Vivi3g04073 395 SMART arm_5 111 151 IPR000225 GO:0005515
Vivi3g04073 395 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 122 164 IPR000225 GO:0005515
Vivi3g04073 395 MobiDBLite consensus disorder prediction 1 33 - -
Vivi3g04073 395 FunFam U-box domain-containing protein 4 24 378 - -
Vivi3g04073 395 Pfam Armadillo/beta-catenin-like repeat 155 191 IPR000225 GO:0005515
Vivi3g04073 395 Pfam Armadillo/beta-catenin-like repeat 112 150 IPR000225 GO:0005515
Vivi3g04073 395 SUPERFAMILY ARM repeat 41 346 IPR016024 -
Vivi3g04073 395 PANTHER U BOX DOMAIN-CONTAINING 34 324 - -
Vivi3g04073 395 Gene3D - 22 378 IPR011989 -
Vivi3g04073 395 MobiDBLite consensus disorder prediction 1 25 - -
Vivi3g04073 395 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 163 205 IPR000225 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi3g04073 Vivi-Chr3 70957775 70961154 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi3g04073 42 319 U-box Gene Family AT2G23140 32.143 7.46e-36 137
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi3g04073 - - gmx:100809684 636.336
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi3g04073 3 70957775 70961154 Vivi3g04073 3 70957775 70961154 ECH