Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi3g04062 ATGTTCATGGGTGGCTTCTTTACTGCATGGTTCAAAACTCAGAAGCACAGTCATCCGTATTATCGTTTGAATGATAGAGAAGATGGTACATTGAAGTGCTTCAGTTTAAAGGATTTAAAAGCTGCAACAAGGAACTTAATTCAAGTGAGAGATGACAAGCTTTGTTGTGTTAAGGGGTGGATTGATGAGCATACATTAGCCCCCAGTAAACCAGGTCCGGGCTTTGAAATTACTGTCAGGAAGCTTAACCAAGTGTGCCATCAGGAACATGATGAATTGTTGTTGAGTTTCAACAACATGGGACAATTGAGTCATCCCAATCTTGCCAAACTCATTGGTTATTGCTTAGAGGATATCCACCCCATTTTGGTATACGATTTTTCAGCCGAGGGAAGCTTGGACAATCATTTGTATAAAAGATCTTCTAATGTTCAGCCGCTATCATGGAAAAGCAGAATGCAAATAGCTCTTGATGTTGCTAAGGCTCTTGCATATCTTCACAGTGATGAAGTCAAAGTGATACGTGGAGATTTAAATACTTCTAATATCTTAATTGATCCAAATCACAATGCAAAGGTATTCGATTTCGGATTAAATAAAAACGATGGGGTTACTAGGTGCTATGATTATGCAGCAATTTACTCAGCACCTGACTACTTTATGACAGGTCAACAAACCAAAAAGGGTGATGTATACAGTTTTGGAGTTGTTCTGTTGGAAATCATGTCTGGCAAATGTGTATTTGATAAAAATAGGCCACAAAATGAACGTAATTTAATTGAATGGGCCAAGCCGTTGCTCTTGAACAAATGCAAGATCTTCCGAGTCATGGATTGCTATATAGAAGGGCAATACTCGCCGCGTGAAGCAATGAAAGTAGCTTGCATTGTAATTTGTTGTCTGTCTGAAACACCAAAAAATAGACCAAACATGGATGAGGTGGTGACAGCATTGGAACAGCTTCAGGATTCTGATGACACAATTGGAACAGCTTCTCCACTTTGTGGAAATTGA 1014 0.3915 MFMGGFFTAWFKTQKHSHPYYRLNDREDGTLKCFSLKDLKAATRNLIQVRDDKLCCVKGWIDEHTLAPSKPGPGFEITVRKLNQVCHQEHDELLLSFNNMGQLSHPNLAKLIGYCLEDIHPILVYDFSAEGSLDNHLYKRSSNVQPLSWKSRMQIALDVAKALAYLHSDEVKVIRGDLNTSNILIDPNHNAKVFDFGLNKNDGVTRCYDYAAIYSAPDYFMTGQQTKKGDVYSFGVVLLEIMSGKCVFDKNRPQNERNLIEWAKPLLLNKCKIFRVMDCYIEGQYSPREAMKVACIVICCLSETPKNRPNMDEVVTALEQLQDSDDTIGTASPLCGN 337
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi3g04062 337 Gene3D Phosphorylase Kinase; domain 1 20 127 - -
Vivi3g04062 337 Pfam Protein tyrosine and serine/threonine kinase 69 318 IPR001245 GO:0004672|GO:0006468
Vivi3g04062 337 Gene3D Transferase(Phosphotransferase) domain 1 129 331 - -
Vivi3g04062 337 ProSiteProfiles Protein kinase domain profile. 1 321 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi3g04062 337 FunFam protein STRUBBELIG-RECEPTOR FAMILY 8 128 331 - -
Vivi3g04062 337 PANTHER OS01G0588500 PROTEIN-RELATED 30 322 - -
Vivi3g04062 337 SUPERFAMILY Protein kinase-like (PK-like) 75 325 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi3g04062 Vivi-Chr3 70767862 70769584 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi3g04062 22 318 Receptor kinase-like Gene Family AT3G58690 36.218 5.78e-56 185
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Vivi3g04062 PK_Tyr_Ser-Thr 5.4e-33 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi3g04062 - - vvo:131661826 603.979