Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi3g04040 ATGTCCTCCAAAAAATATTTCTCAATGTTCTTCCATGTATTAGTATTTGCAACTCTTGCAACTACAACATTTTCAGCACTAACACCAAATTACTATGACTATACTTGTCCCAACGCTTTGAGCACCATTAAAAGCGTCGTGAAAGCTGCAGTTCAAAAGGAAAATCGCATGGGTGCTTCTTTACTACGCTTGCACTTTCATGATTGCTTTGTTAATGGTTGCGACGGTTCGATTCTTTTAGACTCTACGTCTTCCATGGAAAGTGAAAAAAATGCAAATCCAAATATCAATTCAGCTAGAGGATTTGAAGTAATAGATAAGATCAAACAAGCTGTGGATGAAGCATGTGGAAAATCGGTTGTTTCTTGTGCAGATATATTGACTATCGCTGTGAGAGACTCCGTCGTCGCGTTAGGAGGACCATCATGGAAAGTGAAACTAGGAAGAAGAGATTCAAGGACAGCGAGTCGAGCCGATGCAGACAAAGACATCCCCGGACCATCTTTCAGTCATGCTCAACTCCTCAAAAACTTCGAAAACCATGGCCTAAATGAAAAAGACCTAGTTGCTCTTTCTGGAGCACACACTATTGGATTTTCACGTTGCCTTTTATTTAGGGATCGAATCTACAATGACAACAACATCGATTCTAGCTTTGCAAAAGAGCTTCAAAATATTTGTCCGAGAAACGGAGGAGACTCTAACCTTACGCCTTTGGATAGGGTTACACGGGCGAAATTCGATGTGCTTTATTTCGCGGATTTGATTGAAAAGAAAGGTGTTCTTCATTCTGATCAGGAATTGTTGAATGGTGGTTATAGTGGTGCGTTGGTGAGAAAATATAGTTATGATACTAGGGCTTTCTATAAGGATTTTGCTAAATCTATGATTAAGATGGGAAATATTAAGCCACTTGTTGGAAATCAAGGTGAAGTTCGTTACAACTGCAGGAAAGCCAATTAA 963 0.3956 MSSKKYFSMFFHVLVFATLATTTFSALTPNYYDYTCPNALSTIKSVVKAAVQKENRMGASLLRLHFHDCFVNGCDGSILLDSTSSMESEKNANPNINSARGFEVIDKIKQAVDEACGKSVVSCADILTIAVRDSVVALGGPSWKVKLGRRDSRTASRADADKDIPGPSFSHAQLLKNFENHGLNEKDLVALSGAHTIGFSRCLLFRDRIYNDNNIDSSFAKELQNICPRNGGDSNLTPLDRVTRAKFDVLYFADLIEKKGVLHSDQELLNGGYSGALVRKYSYDTRAFYKDFAKSMIKMGNIKPLVGNQGEVRYNCRKAN 320
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi3g04040 320 CDD secretory_peroxidase 27 318 IPR033905 GO:0004601|GO:0042744
Vivi3g04040 320 PRINTS Plant peroxidase signature 238 253 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vivi3g04040 320 PRINTS Plant peroxidase signature 36 55 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vivi3g04040 320 PRINTS Plant peroxidase signature 60 80 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vivi3g04040 320 PRINTS Plant peroxidase signature 100 113 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vivi3g04040 320 PRINTS Plant peroxidase signature 254 271 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vivi3g04040 320 PRINTS Plant peroxidase signature 186 198 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vivi3g04040 320 PRINTS Plant peroxidase signature 120 130 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vivi3g04040 320 PRINTS Plant peroxidase signature 139 154 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vivi3g04040 320 PRINTS Plant peroxidase signature 294 307 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vivi3g04040 320 Pfam Peroxidase 44 282 IPR002016 GO:0004601|GO:0006979|GO:0020037
Vivi3g04040 320 ProSitePatterns Peroxidases active site signature. 58 69 IPR019794 GO:0004601
Vivi3g04040 320 Gene3D Peroxidase, domain 2 165 299 - -
Vivi3g04040 320 PANTHER PEROXIDASE 72-RELATED 25 318 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vivi3g04040 320 SUPERFAMILY Heme-dependent peroxidases 27 320 IPR010255 GO:0004601|GO:0006979|GO:0020037
Vivi3g04040 320 ProSitePatterns Peroxidases proximal heme-ligand signature. 187 197 IPR019793 -
Vivi3g04040 320 PRINTS Haem peroxidase superfamily signature 240 255 IPR002016 GO:0004601|GO:0006979|GO:0020037
Vivi3g04040 320 PRINTS Haem peroxidase superfamily signature 121 138 IPR002016 GO:0004601|GO:0006979|GO:0020037
Vivi3g04040 320 PRINTS Haem peroxidase superfamily signature 58 72 IPR002016 GO:0004601|GO:0006979|GO:0020037
Vivi3g04040 320 PRINTS Haem peroxidase superfamily signature 187 202 IPR002016 GO:0004601|GO:0006979|GO:0020037
Vivi3g04040 320 PRINTS Haem peroxidase superfamily signature 139 151 IPR002016 GO:0004601|GO:0006979|GO:0020037
Vivi3g04040 320 ProSiteProfiles Plant heme peroxidase family profile. 26 320 IPR002016 GO:0004601|GO:0006979|GO:0020037
Vivi3g04040 320 FunFam Peroxidase 165 299 - -
Vivi3g04040 320 Gene3D - 30 317 - -
Vivi3g04040 320 FunFam Peroxidase 30 173 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi3g04040 Vivi-Chr3 70278970 70280796 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi3g04040 27 320 Peroxidase AT5G05340 59.797 5.00e-128 367
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi3g04040 K00430 - gmx:100799894 460.299