Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi3g04028 ATGCCCTTGGAAGGGATTTTCATTGAACCAACAAATCCAACATCAACACAAACTCAACCTGATCTTTCTCTTCACATAAGTCCACCAAGTACTTCTTCTTCTTTGGTTTCCAACAACATAGACACAACTCATTTACTCAATTATGAACCTCGCAATTCATCAAGAACTTTTGCTCAAACTCAGACTCAGACTCAAGCTCAAGCTCACACTGAACTTTCTCTTGGAAGAAATTTCAGTGGTGGTGGTGTTCAAGAACTACATCAACAACAACAACCACATAACCCTTATTATCAAACCCATCAATCTCATTTCCCTAATCTTCAACATCACCACAACTCGACAACTACAACGAGTACAACAACAAATTCTACCTCAATGAATCACATAAATTACGGTGTCTCTTTGCTCGATGTATCATCCTCCTCTTCCTCGGAAGGTTTAAGACCAATCAAAGGAATCCCGGTCTATCACAACCGTTCATTCCCTTTCTTACCAGCCATGGAACATTCCAGAGAAAAAGATCCAAAGATGTGTTTATATCACCACATGCCAAATTCAACTCCAACTCCTTCTCCTTCTTCATCATCTCCTCTTTCCCCCTACATCACTACAGGAGCCTTAGATCCCATGTCGTTCTTAAACTCCAGTGGCTCAGCGGCCGCTTACCGAGCCGCTGTAGCCACCAGGTTTAACAACAACGAACCCTTCAAATCTCATCAATACCCATTGCACCATCATCATCATCACTCGCACTACGGTAGCCTCGGACTCGGAAACTCCGAAGCATCCATGAGATCAAGGTTTCTACCAAAGCTACCAACAAAAAGAAGCATGAGAGCACCAAGAATGAGATGGACAAGTACCCTCCATGCTAGATTCGTTCACGCCGTTGAGCTTCTTGGTGGCCATGAAAGAGCAACGCCAAAGTCAGTACTTGAACTGATGGATGTGAAGGATCTCACATTAGCTCATGTAAAAAGCCATTTGCAGATGTATCGAACTGTTAAGACTACTGATAAACCAGCAGCTTCTTCAGATGGATCTGGAGAAGATGATGTACCTCAAATTGGAAGCAATGGTGGACTTCGTCAGTTTTCAGATCAAAGAAGCTTGAATGATAGACCAATACAACAAGATATGGATTACTCTTCCACAACCACTCTTTGGAGTAATTCTTCAAGTAGTAGAGAACCATGGCCACAAACTAGTCCTAACGATGTAGACGGTTTCAGACCAGCTATCTTCCAGTCACAACCAGTATCAGGAGTGCATCAAATTCAGGATTGTGATTCGAATCAACTGAAGAACAATTTGTCGGGATCTAACTTAGAGTGTAAGAACCCAAGCTTGGAGTTCACATTAGGCATACCAGATTGGAATGGCAAAGGACAAGCCTAA 1398 0.4249 MPLEGIFIEPTNPTSTQTQPDLSLHISPPSTSSSLVSNNIDTTHLLNYEPRNSSRTFAQTQTQTQAQAHTELSLGRNFSGGGVQELHQQQQPHNPYYQTHQSHFPNLQHHHNSTTTTSTTTNSTSMNHINYGVSLLDVSSSSSSEGLRPIKGIPVYHNRSFPFLPAMEHSREKDPKMCLYHHMPNSTPTPSPSSSSPLSPYITTGALDPMSFLNSSGSAAAYRAAVATRFNNNEPFKSHQYPLHHHHHHSHYGSLGLGNSEASMRSRFLPKLPTKRSMRAPRMRWTSTLHARFVHAVELLGGHERATPKSVLELMDVKDLTLAHVKSHLQMYRTVKTTDKPAASSDGSGEDDVPQIGSNGGLRQFSDQRSLNDRPIQQDMDYSSTTTLWSNSSSSREPWPQTSPNDVDGFRPAIFQSQPVSGVHQIQDCDSNQLKNNLSGSNLECKNPSLEFTLGIPDWNGKGQA 465
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi3g04028 465 MobiDBLite consensus disorder prediction 1 21 - -
Vivi3g04028 465 FunFam Myb family transcription factor 279 337 - -
Vivi3g04028 465 Gene3D - 280 337 - -
Vivi3g04028 465 PANTHER TRANSCRIPTION FACTOR KAN2-RELATED 20 462 IPR044847 GO:0000976|GO:0006355|GO:0010158
Vivi3g04028 465 SUPERFAMILY Homeodomain-like 278 334 IPR009057 -
Vivi3g04028 465 MobiDBLite consensus disorder prediction 359 402 - -
Vivi3g04028 465 NCBIfam myb-like DNA-binding domain, SHAQKYF class 281 334 IPR006447 GO:0003677
Vivi3g04028 465 MobiDBLite consensus disorder prediction 338 412 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi3g04028 Vivi-Chr3 69917380 69923171 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi3g04028 138 462 G2-like Transcription Factor Family AT5G16560 48.295 1.78e-79 251
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Vivi3g04028 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi3g04028 - - ccaj:109796302 572.007