LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vivi3g04016	ATGGCTAAAAACAACACTATCCACCGAATCCTCTTACTCTTCTCATTCCTCTCTCTTCTTTTTCCCATTCATGCCAAACTCCACCTCCACCCTTCCGACGCAAAAGCCCTCGCATCTCTCCAAAACAACTTCGGCCTCAAAACCAACACCACAAACCACCCGTGTAACACGGAGGGTGTATTCTGCGAACGACGACTCACCGCCAACGAAAGCTACTCCCTCCGAGTCACAAAACTCGTTTTCAAATCAAAGAAACTCGTAGGCACTCTTTCACCAACCATTGGAAAACTAACTGAACTCAAAGAACTCTCTCTTCCAAACAACAAACTCGTTGACCGTATCCCTTCCTCCATAGTTGACTGCAGAAAACTCGAGATTCTTAATATTGCTAATAATTTTTTCTCCGGCGAAGTTCCTAATGAATTCTCTTCTCTCGTCCGTCTTCGTTTTCTTGATATTTCTGGAAATAAACTCTCCGGAAACTTGAATTTTCTTCGATATTTTCCAAATTTAGAAACTCTTTCTGTTGCAAACAATCACTTTACAGGAAGAATCCCCGCTTCGGTTCGGTCTTTTCGTAATCTCAGACACTTTAACTTCTCTGGTAACGGTTTTCTCGAAGCCCTGCCGTTGAATCAGAAGCTTCTAGAATATGATAATACTAATACCGATACCAATACCGCGAATAAGCGGTATATCCTTGCTGAGAATTCGAATTCGAATTCAAATGGAACAAGGAGTCGTTCTCGTTCTAATTCGCCTGCTCCAGCACCTGGTCCTGCAGCAGTGGATCATCACCATAATCATAAGAACAGGAGGAAGCTTACTGGATGGATTCTTGGATTCATTGCAGGAGCATTCGCTGGGATACTATCCGGTTTCGTGTTTTCGTTGTTGTTTAAGTTGGCTTTGATTGTGATTAAAGGAAGAGGAAAAGGTTCTGGTCCTGCAATTTATAGTTCTTTGATTAAGAAAGCTGAGGATTTAGCTTTCTTGGAGAAAGAAGACGGTTTAGCTTCGTTGGAACTTATCGGAAGAGGTGGATGTGGCGAGGTTTACAAGGCCGAGTTACCGGGAAGTAATGGTAAAATGATTGCTATCAAGAAGATTATTCAGCCGTCGAAGGATGCAGCGGAGTTGGCTGAAGAAGATAGTAAGCTTCTGCATAAGAAGATGCGACAGATTAAGTCGGAGATTGATACTGTCGGTCAGATTCGTCATCGCAATCTTTTGCCACTTTTGGCTCATGTTTCTAGACCGGATTGTCATTACCTTGTGTATGAGTTTATGAAGAATGGAAGTTTGCAGGATATGTTGAGCAAAGTTGAAAGAGGTGAAGCAGAGTTGGATTGGTTGACAAGGCATAGGATTGCACTTGGTATCGCGGAAGGGCTTGAATACCTTCACACGAGCCATAGTCCTCGCATTATTCATCGTGATCTTAAGCCTGCAAATATTCTTCTTGACGATGATATGGAAGCTAGGATTGCGGATTTTGGACTCGCGAAAGCAATGCCTGATGCGCAGACGCATATCAGTACTTCGAACGTAGCTGGCACGGTGGGATATATCGCGCCCGAGTATCATCAGATATTCAAATTCAGTGACAAGTGTGACATATTTAGCTTTGGTGTTATGCTTGGTGTTTTGGTGATAGGAAAGCTTCCTTCTGATGATTTTTTTCAGAGTACTGATGAGATGAGTTTGGTCAAGTGGATGAGAAATGTGATGACTTCCGAAAATCCGAAGGACGCAATTGATGCAAAGCTCATTGGTAATGGTTATGAGGAACAGATGCTTCTGGTTTTGAAAATTGCTTGCTTTTGCACCATGGATAATCCTAAAGAGAGGCCTGATAGTAAGAATGTCAGGATCATGTTGTTCCAAATCAAGCACTAG	1899	0.426	MAKNNTIHRILLLFSFLSLLFPIHAKLHLHPSDAKALASLQNNFGLKTNTTNHPCNTEGVFCERRLTANESYSLRVTKLVFKSKKLVGTLSPTIGKLTELKELSLPNNKLVDRIPSSIVDCRKLEILNIANNFFSGEVPNEFSSLVRLRFLDISGNKLSGNLNFLRYFPNLETLSVANNHFTGRIPASVRSFRNLRHFNFSGNGFLEALPLNQKLLEYDNTNTDTNTANKRYILAENSNSNSNGTRSRSRSNSPAPAPGPAAVDHHHNHKNRRKLTGWILGFIAGAFAGILSGFVFSLLFKLALIVIKGRGKGSGPAIYSSLIKKAEDLAFLEKEDGLASLELIGRGGCGEVYKAELPGSNGKMIAIKKIIQPSKDAAELAEEDSKLLHKKMRQIKSEIDTVGQIRHRNLLPLLAHVSRPDCHYLVYEFMKNGSLQDMLSKVERGEAELDWLTRHRIALGIAEGLEYLHTSHSPRIIHRDLKPANILLDDDMEARIADFGLAKAMPDAQTHISTSNVAGTVGYIAPEYHQIFKFSDKCDIFSFGVMLGVLVIGKLPSDDFFQSTDEMSLVKWMRNVMTSENPKDAIDAKLIGNGYEEQMLLVLKIACFCTMDNPKERPDSKNVRIMLFQIKH	632

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vivi3g04016	632	MobiDBLite	consensus disorder prediction	236	254	-	-
	Vivi3g04016	632	Coils	Coil	378	398	-	-
	Vivi3g04016	632	FunFam	leucine-rich repeat receptor-like serine/threonine/tyrosine-protein kinase SOBIR1	325	429	-	-
	Vivi3g04016	632	FunFam	Leucine-rich repeat receptor-like protein kinase	430	632	-	-
	Vivi3g04016	632	SUPERFAMILY	Protein kinase-like (PK-like)	332	630	IPR011009	-
	Vivi3g04016	632	PANTHER	LEUCINE-RICH REPEAT RECEPTOR PROTEIN KINASE EMS1	67	630	-	-
	Vivi3g04016	632	SMART	serkin_6	338	629	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Vivi3g04016	632	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	476	488	IPR008271	GO:0004672\|GO:0006468
	Vivi3g04016	632	FunFam	LRR receptor-like serine/threonine-protein kinase ERECTA	71	162	-	-
	Vivi3g04016	632	Gene3D	Transferase(Phosphotransferase) domain 1	430	631	-	-
	Vivi3g04016	632	MobiDBLite	consensus disorder prediction	236	268	-	-
	Vivi3g04016	632	Pfam	Protein kinase domain	341	596	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Vivi3g04016	632	Gene3D	Phosphorylase Kinase; domain 1	327	429	-	-
	Vivi3g04016	632	ProSiteProfiles	Protein kinase domain profile.	338	632	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Vivi3g04016	632	Gene3D	Ribonuclease Inhibitor	165	238	IPR032675	-
	Vivi3g04016	632	Gene3D	Ribonuclease Inhibitor	29	164	IPR032675	-
	Vivi3g04016	632	SUPERFAMILY	L domain-like	54	210	-	-
	Vivi3g04016	632	Pfam	Leucine rich repeat	99	158	IPR001611	GO:0005515

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Vivi3g04016	Vivi-Chr3	69651528	69653769	Dispersed/Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vivi3g04016	11	632	Receptor kinase-like Gene Family	AT2G31880	61.367	0.0	779

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_LRR-XI-2	Vivi3g04016		Pkinase	1.3e-42	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vivi3g04016	-		-	gmx:100811980	873.618