Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi3g04012 ATGTCTGTAACTTCCACCACTCCCCTCTTCAAATCCCTAACCATAGCCGCACTCTTCCACACCAAAACCAAACCTACCTCCTTCTCACTCCCCTCCAAACCCTTCAAACTCCATCTCTCCCTCAATTCCTCACCCTCTCTCACTCTCTTCCACAAAACCAACCGCGCCACACCTCTCTTCGCCGCGCAAGAAGGTGACACACTAACCACAGACGAAGAAGGTGCCGTTGAAACCGACGGAGTTCTCGATTGGGGGGAACCCGAAACTGCTGAAAACGAGACTGGTGAAGAAGACTCTGTGGGAGGTGATTTTGCGGAACCGCCAGAAGATGCGAAATTGTTCGTTGGTAATTTGCCTTATGATGTTGATAGTGAGAAACTCGCCATGCTTTTTGAGTCGGCTGGAACTGTAGAGATTGCTGAGGTTATTTATAACAGGGAAACTGACCGGAGTCGCGGATTTGGATTTGTAACCATGAGTACTGTTGAAGAAGCTGAAGCTGGTGTGGAGAAATTCAGCGGCTATGATTATAATGGAAGAGCCTTGACTGTGAATAAGGCTTCTCCAAGAGGAACAAGGCCAGAGCGGGAAGACCGCCCACCTCGTACATATGAACCTGTCATGAGAGTTTATGTTGGTAACTTATCATGGGAAGTTGATGATAGTATACTTGAGCAAGTTTTCAGTGAACATGGTAAGGTTGTGAGTGCTCGAGTAGTCTATGATAGAGAGACTGGTCGATCACGTGGCTTTGGCTTTGTCACTTTGTCTGATGAGAAAGAAATGAGTGATGCCATTGCTGCCCTTGATGGTCAGATTGTGGAAGGGAGGGCAATAAAAGTGAGTGTTGCTATAGACAGGCCCAGGCGGGGCTCCTTTTGA 882 0.4785 MSVTSTTPLFKSLTIAALFHTKTKPTSFSLPSKPFKLHLSLNSSPSLTLFHKTNRATPLFAAQEGDTLTTDEEGAVETDGVLDWGEPETAENETGEEDSVGGDFAEPPEDAKLFVGNLPYDVDSEKLAMLFESAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEAGVEKFSGYDYNGRALTVNKASPRGTRPEREDRPPRTYEPVMRVYVGNLSWEVDDSILEQVFSEHGKVVSARVVYDRETGRSRGFGFVTLSDEKEMSDAIAALDGQIVEGRAIKVSVAIDRPRRGSF 293
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi3g04012 293 MobiDBLite consensus disorder prediction 70 104 - -
Vivi3g04012 293 CDD RRM2_NsCP33_like 209 284 - -
Vivi3g04012 293 Gene3D - 86 196 IPR012677 -
Vivi3g04012 293 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 208 286 IPR000504 GO:0003723
Vivi3g04012 293 PANTHER OS02G0815200 PROTEIN 24 287 - -
Vivi3g04012 293 FunFam 31 kDa ribonucleoprotein, chloroplastic 198 292 - -
Vivi3g04012 293 MobiDBLite consensus disorder prediction 62 108 - -
Vivi3g04012 293 SMART rrm1_1 209 282 IPR000504 GO:0003723
Vivi3g04012 293 SMART rrm1_1 112 185 IPR000504 GO:0003723
Vivi3g04012 293 SUPERFAMILY RNA-binding domain, RBD 107 202 IPR035979 GO:0003676
Vivi3g04012 293 SUPERFAMILY RNA-binding domain, RBD 201 291 IPR035979 GO:0003676
Vivi3g04012 293 Gene3D - 197 293 IPR012677 -
Vivi3g04012 293 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 210 280 IPR000504 GO:0003723
Vivi3g04012 293 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 113 182 IPR000504 GO:0003723
Vivi3g04012 293 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 111 189 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi3g04012 Vivi-Chr3 69586318 69588652 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi3g04012 102 293 Eukaryotic Initiation Factors Gene Family AT3G16380 27.083 8.05e-14 69.7