LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vivi3g04000	ATGGCTAAAAACAACACTATCCCCCAAATCCTCTTACTCTTCTCATTCCTCTCTCTTCTTTTTTCCATTCATGCCAAACTCCTCCTCCACCCTTCCGACGCAAAAGCCCTCGCATCTCTCCAAAACAACTTCGGCCTCAAAACCAACACCACCAACCACCCGTGTAACACGGAGGGTGTGTTCTGCGAACGACGACTCGCCGCCAACGAAAGCTACTCCCTCCGAGTCACAAAACTCGTTTTCAAATCAAAGAAACTCATAGGCACTCTTTCACCATCCATTGGAAAACTAACAGAACTCAAAGAACTCTCTCTTTCAAACAACAAACTCGTTGACCGTATCCCTTCCTCCATAGTTGACTGCAGAAAACTCGAGATTCTTAATGTTGCTAATAATTTTTTCTCCGGCGAAGTTCCTAACGAATTCTCTTCTCTCGTCCGTCTTCGTTTTCTTGATATTTCTGGAAATAAACTCTCCGGAAACTTGAATTTTCTTCGCTATTTTCCGAATTTAGAAACTCTTTCCGTTGCAAACAATCACTTTACAGGAAGAGTTCCGGCTTCGGTTCGGTCTTTTCGTAATCTCAGACACTTTAACTTCTCTGGTAACGGTTTTCTCGAAGCCCTGCCGTTGAATCAGAAGCTTCTAGAATATGATAATACCAATACCGGGAATAAGCGGTATATCCTTGCTGAGAATTCGAATTCGAATTCAAATGGAACAAGGAGTCGTTCTCGTTCTAGTTCTAATTCTCCTGCTCCAGCACCTGGTCCTGCAGCAGTGGATCATCACCACAATCATAAGAACAGGAGGAAGCTTACTGGATGGATACTTGGATTCATTGCAGGAGCATTCGCTGGGATACTATCCGGTTTCGTGTTTTCATTGTTGTTTAAGTTGGCTTTGATTGTGATTAAAGGAAGAGGAAAAGGTTCTGGTCCTGCAATTTATAGTTCTTTGATTAAGAAAGCTGAGGATTTAGCTTTCTTGGAGAAAGAAGACGGTTTAGCTTCGTTGGAACTTATCGGAAGAGGTGGATGTGGCGAGGTTTACAAGGCCGAGTTACCAGGAAGTAATGGTAAGATGATTGCTATAAAGAAGATTATTCAGCCGTCGAAGGATGCAGCGGAGTTGGCTGAAGAAGATAGTAAGCTTCTGCATAAGAAGATGCGACAGATTAAGTCGGAGATTGATACTGTCGGTCAGATTCGTCATCGCAATCTTTTGCCTCTTTTGGCTCATGTTTCTAGACCTGATTGTCATTACCTTGTGTATGAGTTTATGAAGAATGGAAGTTTGCAGGATATGTTGAGCAAAGTTGAAAGAGGTGAAGCGGAGTTGGATTGGTTGACAAGGCATAGGATTGCACTTGGTATCGCGGAAGGGCTTGAATACCTTCACACGAGCCATAGTCCTCGCATTATTCATCGTGATCTCAAGCCTGCAAACATTCTTCTTGACGATGATATGGAAGCTAGGATTGCGGATTTTGGACTCGCGAAAGCAATGCCTGACGCGCAGACGCATATCAGTACTTCGAACGTAGCTGGCACGGTGGGATATATCGCGCCCGAGTATCATCAGATATTCAAATTCAGTGACAAGTGTGACATATTTAGCTTTGGTGTTATGCTTGGTGTTTTGGTGATAGGGAAGCTTCCATCTGATGATTTTTTTCAGAGTACTGATGAGATGAGTTTGGTTAAGTGGATGAGAAATGTGATGACTTCCGAAAATCCGAAGGACGCAATTGATGCAAAGCTCATTGGTAATGGTTATGAGGAGCAGATGCTTCTGGTTTTGAAGATTGCTTGCTTTTGCACCATGGATAATCCTAAAGAGAGGCCTGATAGTAAGAATGTCAGGATCATGTTGTTCCAAATCAAGCACTAG	1893	0.4305	MAKNNTIPQILLLFSFLSLLFSIHAKLLLHPSDAKALASLQNNFGLKTNTTNHPCNTEGVFCERRLAANESYSLRVTKLVFKSKKLIGTLSPSIGKLTELKELSLSNNKLVDRIPSSIVDCRKLEILNVANNFFSGEVPNEFSSLVRLRFLDISGNKLSGNLNFLRYFPNLETLSVANNHFTGRVPASVRSFRNLRHFNFSGNGFLEALPLNQKLLEYDNTNTGNKRYILAENSNSNSNGTRSRSRSSSNSPAPAPGPAAVDHHHNHKNRRKLTGWILGFIAGAFAGILSGFVFSLLFKLALIVIKGRGKGSGPAIYSSLIKKAEDLAFLEKEDGLASLELIGRGGCGEVYKAELPGSNGKMIAIKKIIQPSKDAAELAEEDSKLLHKKMRQIKSEIDTVGQIRHRNLLPLLAHVSRPDCHYLVYEFMKNGSLQDMLSKVERGEAELDWLTRHRIALGIAEGLEYLHTSHSPRIIHRDLKPANILLDDDMEARIADFGLAKAMPDAQTHISTSNVAGTVGYIAPEYHQIFKFSDKCDIFSFGVMLGVLVIGKLPSDDFFQSTDEMSLVKWMRNVMTSENPKDAIDAKLIGNGYEEQMLLVLKIACFCTMDNPKERPDSKNVRIMLFQIKH	630

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vivi3g04000	630	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	474	486	IPR008271	GO:0004672\|GO:0006468
	Vivi3g04000	630	PANTHER	LEUCINE-RICH REPEAT RECEPTOR PROTEIN KINASE EMS1	65	628	-	-
	Vivi3g04000	630	Pfam	Leucine rich repeat	99	158	IPR001611	GO:0005515
	Vivi3g04000	630	SUPERFAMILY	L domain-like	52	210	-	-
	Vivi3g04000	630	MobiDBLite	consensus disorder prediction	231	266	-	-
	Vivi3g04000	630	FunFam	Leucine-rich repeat receptor-like protein kinase	428	630	-	-
	Vivi3g04000	630	MobiDBLite	consensus disorder prediction	231	254	-	-
	Vivi3g04000	630	FunFam	leucine-rich repeat receptor-like serine/threonine/tyrosine-protein kinase SOBIR1	323	427	-	-
	Vivi3g04000	630	FunFam	LRR receptor-like serine/threonine-protein kinase ERECTA	71	162	-	-
	Vivi3g04000	630	Pfam	Protein kinase domain	339	594	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Vivi3g04000	630	SUPERFAMILY	Protein kinase-like (PK-like)	330	628	IPR011009	-
	Vivi3g04000	630	Gene3D	Transferase(Phosphotransferase) domain 1	428	629	-	-
	Vivi3g04000	630	Gene3D	Ribonuclease Inhibitor	165	238	IPR032675	-
	Vivi3g04000	630	Coils	Coil	376	396	-	-
	Vivi3g04000	630	Gene3D	Ribonuclease Inhibitor	31	164	IPR032675	-
	Vivi3g04000	630	Gene3D	Phosphorylase Kinase; domain 1	325	427	-	-
	Vivi3g04000	630	ProSiteProfiles	Protein kinase domain profile.	336	630	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Vivi3g04000	630	SMART	serkin_6	336	627	IPR000719	GO:0004672\|GO:0005524\|GO:0006468

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Vivi3g04000	Vivi-Chr3	69297353	69299618	Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vivi3g04000	8	630	Receptor kinase-like Gene Family	AT2G31880	61.429	0.0	780

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_LRR-XI-2	Vivi3g04000		Pkinase	1.3e-42	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vivi3g04000	-		-	gmx:100811980	877.856