Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi3g03994 ATGTCTGTAACTTCCACCACTCCCCTCTTCAAATCCCTCACCATAGCCGCACTCTTCCACACCAAAACCAAACCTACCTTCTTCTCACTCCCCTCCAAACCCTTCAAACTCCATCTCTCCCTCAATTCCTCACCCTCTCTCACTCTCTCCCACAAAACCAACCGCGCTACACCTCTCTTCGCCGCGCAAGAAGGGGACACGCTAACCACAGACGAAGAAGGTGCCGTTGAAACCGACGGACTTCTCGATTGGGGGGAACCCGAAACTGCTGAAAACGAGACTGGTGAAGACGACTCTGTGGGAGGTGATTTTGCGGAACCGCCAGAAGATGCGAAATTGTTCGTTGGTAATTTGCCTTATGATGTTGATAGTGAGAAACTCGCCATGCTTTTTGAGTCGGCTGGAACTGTAGAGATTGCTGAGGTTATTTATAACAGGGAAACTGACCGGAGTCGCGGATTTGGATTTGTAACCATGAGTACTGTTGAAGAAGCTGAAGCTGGTGTGGAGAAATTCAGCGGCTATGATTATAATGGAAGAGCCTTGACTGTGAATAAGGCTGCTCCAAGAGGAACAAGGCCAGAGCGGGAAGAGCGCGCACCTCGTACATATGAACCTGTCACGAGAGTTTATGTTGGTAACTTATCATGGGAAGTTGATGATAGTATACTTGAGCAAGTTTTCAGTGAACATGGTAAGGTTGTGAGTGCTCGAGTAGTCTATGATAGAGAGACTGGTCGATCACGTGGCTTTGGCTTTGTCACTTTGTCTGATGAGAAAGAAATGAGTGATGCCATTGCTGCCCTTGATGGTCAGATTGTGGAAGGGAGGGCAATAAAAGTGAGTGTTGCTATAGACAGGCCCAGGCGGGGCTCCTTTTGA 882 0.4841 MSVTSTTPLFKSLTIAALFHTKTKPTFFSLPSKPFKLHLSLNSSPSLTLSHKTNRATPLFAAQEGDTLTTDEEGAVETDGLLDWGEPETAENETGEDDSVGGDFAEPPEDAKLFVGNLPYDVDSEKLAMLFESAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEAGVEKFSGYDYNGRALTVNKAAPRGTRPEREERAPRTYEPVTRVYVGNLSWEVDDSILEQVFSEHGKVVSARVVYDRETGRSRGFGFVTLSDEKEMSDAIAALDGQIVEGRAIKVSVAIDRPRRGSF 293
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi3g03994 293 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 208 286 IPR000504 GO:0003723
Vivi3g03994 293 Gene3D - 63 195 IPR012677 -
Vivi3g03994 293 MobiDBLite consensus disorder prediction 70 104 - -
Vivi3g03994 293 CDD RRM2_NsCP33_like 209 284 - -
Vivi3g03994 293 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 111 189 IPR000504 GO:0003723
Vivi3g03994 293 PANTHER OS02G0815200 PROTEIN 24 287 - -
Vivi3g03994 293 MobiDBLite consensus disorder prediction 62 108 - -
Vivi3g03994 293 SMART rrm1_1 209 282 IPR000504 GO:0003723
Vivi3g03994 293 SMART rrm1_1 112 185 IPR000504 GO:0003723
Vivi3g03994 293 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 210 280 IPR000504 GO:0003723
Vivi3g03994 293 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 113 182 IPR000504 GO:0003723
Vivi3g03994 293 SUPERFAMILY RNA-binding domain, RBD 107 196 IPR035979 GO:0003676
Vivi3g03994 293 Gene3D - 196 293 IPR012677 -
Vivi3g03994 293 FunFam 31 kDa ribonucleoprotein, chloroplastic 198 292 - -
Vivi3g03994 293 SUPERFAMILY RNA-binding domain, RBD 202 291 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi3g03994 Vivi-Chr3 69228281 69230161 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi3g03994 102 293 Eukaryotic Initiation Factors Gene Family AT3G16380 26.562 1.31e-13 68.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi3g03994 - - tpra:123897635 339.347