Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi3g03983 ATGGGTGAAGGAACTTTTGGGCAGGTCTTGGAGTGCTGGGACAGAGAAAGGAAGGAAATGGTTGCCATTAAAGTTGTTCGTGCAATAAAAAAGTATCGAGAGGCAGCCATGATTGAAATTGAGATGCTGCAGCAACTCGCAAAACATGATAAAGGTGGCAGCCGTTGTGTGCAAATACGGAACTGGTTTGACTATCGTAATCATATCTGTATTGTGTTTGAGAAACTTGGACCAAGCTTATACGATTTTCTAAGGAAAAACAATTATCGTTCATTTCCCATTGATCTTGTTCGCGAGATTGGAAGACAACTATTGGAATGTGTTGCATTCATGCATGACTTACACATGATCCATACTGATCTGAAGCCTGAGAACATTCTTCTGGTTTCATCGGATTATCTTAAAGTCCCTGATTACAAGAGTTCATCCAGAGCACCGTTCTCCTTTTTCAAAAGAGTGCCCAAGTCAAGCGCCATAAAGGTTATTGATTTTGGCAGCACCACATATGAACGAGAAAACCAGAATTACATTGTATCAACACGTCATTATAGAGCACCCGAAGTTATCCTTGGACTTGGGTGGAGCTATCCATGTGATGTATGGAGTGTGGGTTGTATATTAGTCGAGTTATGCACTGGTGAAGCTTTATTTCAGACTCATGAAAATTTAGAGCATCTTGCTATGATGGAGAGGGTGCTTGGTCCATTACCACAGCAGTTATTGAAGAGAGTCGACCGACATGCTGAGAAGTATGTCCGAAGGGGGAGACTGGACTGGCCAGAGGGTGCAACTTCGAGGGAGAGTATTAAAGCTGTAATGAAGCTTCCTCGTCTGCAGAACCTTATAATGCAGCATGTTGATCATTCGGCTGGAGATCTTATACATCTATTGCAGGGGCTACTTAGGTTTGACCCCTTTGAAAGAGTTACCGCTAGGGATGCTCTGAGACATTCATTCTTTATGAGAGATCACCTTAGGAGATGA 984 0.4268 MGEGTFGQVLECWDRERKEMVAIKVVRAIKKYREAAMIEIEMLQQLAKHDKGGSRCVQIRNWFDYRNHICIVFEKLGPSLYDFLRKNNYRSFPIDLVREIGRQLLECVAFMHDLHMIHTDLKPENILLVSSDYLKVPDYKSSSRAPFSFFKRVPKSSAIKVIDFGSTTYERENQNYIVSTRHYRAPEVILGLGWSYPCDVWSVGCILVELCTGEALFQTHENLEHLAMMERVLGPLPQQLLKRVDRHAEKYVRRGRLDWPEGATSRESIKAVMKLPRLQNLIMQHVDHSAGDLIHLLQGLLRFDPFERVTARDALRHSFFMRDHLRR 327
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi3g03983 327 CDD PKc_CLK 1 320 - -
Vivi3g03983 327 FunFam Serine/threonine-protein kinase AFC2 71 320 - -
Vivi3g03983 327 ProSitePatterns Serine/Threonine protein kinases active-site signature. 116 128 IPR008271 GO:0004672|GO:0006468
Vivi3g03983 327 Pfam Protein kinase domain 1 320 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi3g03983 327 SUPERFAMILY Protein kinase-like (PK-like) 2 323 IPR011009 -
Vivi3g03983 327 Gene3D Transferase(Phosphotransferase) domain 1 49 320 - -
Vivi3g03983 327 ProSiteProfiles Protein kinase domain profile. 1 320 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi3g03983 327 PANTHER SERINE/THREONINE-PROTEIN KINASE DOA-RELATED 1 323 - -
Vivi3g03983 327 SMART serkin_6 2 320 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi3g03983 327 Gene3D Phosphorylase Kinase; domain 1 1 75 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi3g03983 Vivi-Chr3 69035311 69038809 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi3g03983 1 320 Core Cell Cycle Gene Families AT1G76540 24.773 5.04e-26 103
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CLK Vivi3g03983 Pkinase 2e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi3g03983 K08287 - gmx:100808961 632.484