Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi3g03970 ATGCCGCTGGATTCTTCTGAGCTAGACGGTGATCCTGATACCGAGTTCGCCGAAATTGATCCCACCGGTCGATATGGCCGGTACAAGGAAGTTTTAGGGAAGGGAGCTTTCAAGAAAGTATACCGAGCTTTTGATGAATTGGAAGGGATTGAAGTGGCTTGGAATCAGGTTAAGGTGTCTGATCTATTGCGTAATTCTGAGGATTTGGAGCGTTTATACTCTGAAGTTCATTTGCTTAAGACTTTGAAGCATAAGAATATTATTAAGTTTTACAATTCATGGGTTGATACCAAGACTGAGAATATTAATTTCATTACTGAAATTTTCACGTCCGGTACATTGCGCCAATACCGGAAGAAACATAAGCATGTTGATTTGAGAGCTTTGAAGAAATGGTCTAGGCAGATTTTGGAGGGCCTTTCGTATCTTCATAGTCATGATCCACCGGTTATTCATAGAGACCTTAAGTGTGACAACATTTTTGTCAATGGGAATCAAGGGGAGGTAAAAATTGGTGATTTAGGGTTGGCTGCCATTCTTCAACAGGCCAGTTCAGCTCACAGTGTTATAGGTACCCCAGAGTTTATGGCCCCAGAACTTTATGAAGAGGAGTACAATGAGCTTGTTGACATATATGCTTTTGGCATGTGCTTGCTAGAGTTGGTAACTGTAGAGTATCCGTATGTTGAATGTTCCAATGCTGCTCAAATATACAAGAAAGTGTCATCTGGAATAAAGCCAGCATCATTGGCAAAAGTAAATGATCCCGAAGTTAAAGCCTTTATAGAAAAGTGCATTGCTAATGTATCACAACGGTTGCCTGCAAGGGTTCTCTTGATGGATCCCTTCCTTCAGTCAGATGATGGTGACAGTGTCGGTCGATCTTCGAGATCTAGAACCCATTCAGGAAATAACTTTGATAATGTACCCATTGCAAAAAGTGCCAAGGATAATTCTGTTGAGGCAAATAGGGAATTCACTGTGGAAGGCCAGAGGAGAGATGTTAATACAATATTTTTAAAACTACGAATTGCTGATTCCACAGGCCATATTCGAAATATCCATTTCCCTTTCGATATTGGAGCAGACACTTCAGTCTCTGTTGCCAGTGAAATGGTTGAGGAGTTGGAGCTTAGTGATCAAGATGTTTCAACTATTGCTATGACAATTGACTCAGAAATTCAATACCACATCCCTAGCTGGAATCCTAGTGAAAATCCCAACAATAATTCTTATCATGATTCCGGCCATACCCCTGAAACTATGCCCGAGGCTTCTCCCATAACAAATGATTCTCCTGGCAGCCTTGCTTTGGAAATATTACCTTCAGGTCGTAAGTACTGGTCAGACTCACCTAAGGGTGTTGGTGGAAGCTCTCCATGTCTGCACGGTTCTTCAAATTTGACTCATGAAATGGATGCGATTGCTGAGGAAGGCGCCTTGTTTGCAAATAGTGCGGAGAAAGAATGTGATGGGACTGCTGATTCCCCTTTCAGTGAAAGTATTACGTCGGACCAGTTTGAAGCTGCTGGTGAAATGTCCTTTGAAGAAGAAGCATCTGTAAGCTTGGAAGATTCTGAAACAGAAGACATTGATAAAATAGCATCAAAGCTGGAAACTTTGTTGGGTATGCAGAGAGAGGAGTTAGACGAACTGAAGAAGAAGCACCAAGTAGCTGTCTCAGATTTTTTGAACGAATTTTCTCCTGAAATTTCCCTACAGCTTCTAAGTATATGCAACCTGAAGTTGCCTGACAGTGAAGTGTAG 1767 0.416 MPLDSSELDGDPDTEFAEIDPTGRYGRYKEVLGKGAFKKVYRAFDELEGIEVAWNQVKVSDLLRNSEDLERLYSEVHLLKTLKHKNIIKFYNSWVDTKTENINFITEIFTSGTLRQYRKKHKHVDLRALKKWSRQILEGLSYLHSHDPPVIHRDLKCDNIFVNGNQGEVKIGDLGLAAILQQASSAHSVIGTPEFMAPELYEEEYNELVDIYAFGMCLLELVTVEYPYVECSNAAQIYKKVSSGIKPASLAKVNDPEVKAFIEKCIANVSQRLPARVLLMDPFLQSDDGDSVGRSSRSRTHSGNNFDNVPIAKSAKDNSVEANREFTVEGQRRDVNTIFLKLRIADSTGHIRNIHFPFDIGADTSVSVASEMVEELELSDQDVSTIAMTIDSEIQYHIPSWNPSENPNNNSYHDSGHTPETMPEASPITNDSPGSLALEILPSGRKYWSDSPKGVGGSSPCLHGSSNLTHEMDAIAEEGALFANSAEKECDGTADSPFSESITSDQFEAAGEMSFEEEASVSLEDSETEDIDKIASKLETLLGMQREELDELKKKHQVAVSDFLNEFSPEISLQLLSICNLKLPDSEV 588
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi3g03970 588 FunFam Probable serine/threonine-protein kinase WNK3 336 427 - -
Vivi3g03970 588 Gene3D - 336 427 - -
Vivi3g03970 588 Pfam Protein kinase domain 29 284 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi3g03970 588 ProSitePatterns Serine/Threonine protein kinases active-site signature. 150 162 IPR008271 GO:0004672|GO:0006468
Vivi3g03970 588 SUPERFAMILY Protein kinase-like (PK-like) 28 285 IPR011009 -
Vivi3g03970 588 MobiDBLite consensus disorder prediction 398 433 - -
Vivi3g03970 588 Pfam Oxidative-stress-responsive kinase 1 C-terminal domain 340 394 IPR024678 GO:0004674|GO:0005524
Vivi3g03970 588 Gene3D Phosphorylase Kinase; domain 1 10 107 - -
Vivi3g03970 588 MobiDBLite consensus disorder prediction 398 436 - -
Vivi3g03970 588 FunFam Probable serine/threonine-protein kinase WNK1 11 107 - -
Vivi3g03970 588 Gene3D Transferase(Phosphotransferase) domain 1 109 292 - -
Vivi3g03970 588 CDD STKc_WNK 24 284 - -
Vivi3g03970 588 MobiDBLite consensus disorder prediction 288 312 - -
Vivi3g03970 588 SMART serkin_6 26 284 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi3g03970 588 MobiDBLite consensus disorder prediction 296 312 - -
Vivi3g03970 588 PANTHER SERINE/THREONINE-PROTEIN KINASE WNK WITH NO LYSINE -RELATED 12 560 - -
Vivi3g03970 588 MobiDBLite consensus disorder prediction 508 528 - -
Vivi3g03970 588 FunFam probable serine/threonine-protein kinase WNK9 109 289 - -
Vivi3g03970 588 ProSiteProfiles Protein kinase domain profile. 26 284 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi3g03970 588 Coils Coil 535 555 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi3g03970 Vivi-Chr3 68845095 68849374 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi3g03970 102 587 MAP Kinase Kinase Kinase AT3G48260 54.825 1.78e-168 484
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK WNK_NRBP Vivi3g03970 Pkinase 5e-51 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi3g03970 K08867 - gmx:100301899 793.112
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi3g03970 3 68845095 68849374 Vivi3g03970 3 68845095 68849374 ECH