Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi3g03969 ATGGCACTTTCTTCCACAGCAGCCACCACTTCCTCCAAACTCCAACTCCCAAACCCCCCACACTCCCACACTTTCACCACTTCCGCTTCAATTTCAAACTCCACAACACTCCGTTCAACCACTCGCCCCAAACTAACCCTAACTCGCCTCTCCTCCTCCTTCCTTAACCCCTCCACAATCCTCCACCTCACTCCCTCCTCTCAACGCACCAACCGTCCTTCCTCCCCCTTCACTGTCCGCGCCGCACGTGGCAAATTCGAGCGCAAAAAGCCACATCTCAACATCGGTACAATTGGCCACGTCGACCATGGTAAAACCACTCTCACTGCTGCTCTTACCATGGCTCTCGCTTCCCTCGGTAACAGCGCCCCTAAAAAGTACGACGAAATTGACGCTGCTCCTGAAGAGCGTGCCCGTGGAATTACAATTAACACTGCTACTGTTGAGTACGAGACTGAAACTCGTCACTATGCTCATGTCGATTGTCCCGGTCACGCTGATTACGTCAAGAATATGATTACTGGTGCCGCGCAAATGGACGGCGCTATCCTTGTTGTATCCGGTGCTGATGGTCCCATGCCTCAAACTAAAGAGCACATCCTTCTCGCCAAACAAGTTGGTGTGCCGAGCGTGGTTGTGTTTTTGAACAAGCAGGACCAAGTGGATGATGAGGAGCTTCTTGAACTTGTGGAGCTTGAAGTTCGAGAGCTTCTCTCATCTTATGAGTTTCCTGGGGATGACATTCCGATTGTTTCTGGTTCAGCGCTCTTGGCCTTGGAAGCGTTAATGGCGAACCCTACACTTAAACGTGGGGATAACCAGTGGGTGGATAAGATTTACCAGCTCATGGATGAAGTTGATAATTATATTCCAATCCCTCAACGTCAGACAGAACTGCCCTTTTTGCTCGCCATTGAGGATGTGTTTTCGATTACTGGTCGTGGAACAGTTGCCACCGGGAGGATTGAAAGAGGGACAGTTAAAGTTGGTGATGTGGTTGACCTTGTTGGTTTGAGGGAAACAAGGAATACAACTGTGACAGGTGTTGAAATGTTCCAGAAGATTTTGGATGATGCTATGGCTGGTGACAACGTGGGGTTGTTGTTGAGAGGTATTCAAAAGATCGATATTCAAAGAGGGATGGTTTTGGCTAAGCCTGGAACCATTACTCCTCACTCCAAATTTACTGCCATTGTGTATGTGTTAAAGAAAGAAGAAGGTGGAAGACACTCACCTTTCTTTGCCGGTTATAGGCCTCAATTTTACATGAGGACTACCGATGTTACTGGAAAAGTTACATCTATTATGAATGACAAGGATGAGGAATCAAAGATGGTGATGCCCGGTGATCGTGTAAAGATGGTGGTTGAACTCATTGTTCCAGTGGCTATTGAACAAGGAATGAGGTTCGCTATCAGAGAAGGAGGGAAGACAGTTGGAGCTGGTGTTATCGGAGCTATCATTGAGTGA 1470 0.4789 MALSSTAATTSSKLQLPNPPHSHTFTTSASISNSTTLRSTTRPKLTLTRLSSSFLNPSTILHLTPSSQRTNRPSSPFTVRAARGKFERKKPHLNIGTIGHVDHGKTTLTAALTMALASLGNSAPKKYDEIDAAPEERARGITINTATVEYETETRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSGADGPMPQTKEHILLAKQVGVPSVVVFLNKQDQVDDEELLELVELEVRELLSSYEFPGDDIPIVSGSALLALEALMANPTLKRGDNQWVDKIYQLMDEVDNYIPIPQRQTELPFLLAIEDVFSITGRGTVATGRIERGTVKVGDVVDLVGLRETRNTTVTGVEMFQKILDDAMAGDNVGLLLRGIQKIDIQRGMVLAKPGTITPHSKFTAIVYVLKKEEGGRHSPFFAGYRPQFYMRTTDVTGKVTSIMNDKDEESKMVMPGDRVKMVVELIVPVAIEQGMRFAIREGGKTVGAGVIGAIIE 489
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi3g03969 489 CDD EFTU_III 390 484 - -
Vivi3g03969 489 MobiDBLite consensus disorder prediction 1 42 - -
Vivi3g03969 489 Pfam Elongation factor Tu domain 2 315 383 IPR004161 GO:0005525
Vivi3g03969 489 ProSitePatterns Translational (tr)-type guanine nucleotide-binding (G) domain signature. 131 146 IPR031157 -
Vivi3g03969 489 SUPERFAMILY EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain 388 488 IPR009001 -
Vivi3g03969 489 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 85 309 IPR027417 -
Vivi3g03969 489 PRINTS GTP-binding elongation factor signature 138 146 IPR000795 GO:0003924|GO:0005525
Vivi3g03969 489 PRINTS GTP-binding elongation factor signature 94 107 IPR000795 GO:0003924|GO:0005525
Vivi3g03969 489 PRINTS GTP-binding elongation factor signature 158 168 IPR000795 GO:0003924|GO:0005525
Vivi3g03969 489 PRINTS GTP-binding elongation factor signature 211 220 IPR000795 GO:0003924|GO:0005525
Vivi3g03969 489 PRINTS GTP-binding elongation factor signature 174 185 IPR000795 GO:0003924|GO:0005525
Vivi3g03969 489 Pfam Elongation factor Tu C-terminal domain 388 487 IPR004160 -
Vivi3g03969 489 NCBIfam small GTP-binding protein domain 94 228 IPR005225 GO:0005525
Vivi3g03969 489 Gene3D Translation factors 428 488 - -
Vivi3g03969 489 PANTHER ELONGATION FACTOR TU-RELATED 79 488 - -
Vivi3g03969 489 ProSiteProfiles Translational (tr)-type guanine nucleotide-binding (G) domain profile. 90 294 IPR000795 GO:0003924|GO:0005525
Vivi3g03969 489 NCBIfam elongation factor Tu 82 489 IPR004541 GO:0003746|GO:0005525|GO:0006414
Vivi3g03969 489 Hamap Elongation factor Tu [tuf]. 81 489 IPR004541 GO:0003746|GO:0005525|GO:0006414
Vivi3g03969 489 CDD EF_Tu 91 293 IPR041709 -
Vivi3g03969 489 Gene3D Translation factors 296 424 - -
Vivi3g03969 489 Pfam Elongation factor Tu GTP binding domain 90 291 IPR000795 GO:0003924|GO:0005525
Vivi3g03969 489 Gene3D - 82 293 IPR027417 -
Vivi3g03969 489 CDD EFTU_II 301 387 IPR033720 -
Vivi3g03969 489 FunFam Elongation factor Tu 81 293 - -
Vivi3g03969 489 FunFam Elongation factor Tu 296 424 - -
Vivi3g03969 489 FunFam Elongation factor Tu 428 488 - -
Vivi3g03969 489 SUPERFAMILY Translation proteins 295 391 IPR009000 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi3g03969 Vivi-Chr3 68835359 68837507 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi3g03969 88 487 Eukaryotic Initiation Factors Gene Family AT5G60390 29.505 3.13e-44 159
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi3g03969 K02358 - qsa:O6P43_030823 776.933
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi3g03969 3 68835359 68837507 Vivi3g03969 3 68835359 68837507 ECH