Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi3g03965 ATGAGTTCTCCTATGGAGACGGAGCAAAACCTTCAAATCGATCAAAACGGCGCCGCTTCCCAACACTCTCCTCCACCTCCGCTGCCACCGGAGGACAAAGTTCTTGTGCCTATCGAGGTTTGCTTAAAACCTTCCAGTACAGCTTCCATTCACGATGTCCGTTCAGCCATTGAGGGGATGCTTGAAAAGAGGAGTTTGAGCTATAATGGCGGACCAATTCCTGTTCCCGTTGATGAGCCATTTCTTGCTGATAATGTGCAAAGAATTTGCGTTTGTGATGCAGGTGAAGGGATGCAAAATGATAATGTTCTTTTGTTCTGGCAAGTCAAGCCGGTTGTACATGTGTTTCAGCTTAGCGAGGAAGGACCATGTGAGGATATCAGCTCTGATGGCCAGTCTTCTAGCTTCAATGAATGGATTCTTCCAGCAAAAGAATTTGATGGCATGTGGGAAAGCCTGATATATGAATCTGGTCTAAAGCAAAGATTGTTGCGGTATGCAGCAAGTGCTTTGCTCTTCACGGAAAAGGCTGTTGATCCGTTCCTTGTTTCATGGAACCGCATAATTCTTTTGCATGGACCCCCTGGAACTGGAAAGACGTCTTTATGTAAAGCATTAGCTCAGAAGCTATCAATTCGATTCAATTCGAGATTCACACAGGCCCAGCTTGTTGAAGTGAATGCACATTCTTTGTTCAGTAAATGGTTCTCCGAAAGCGGCAAGCTGGTAGCAAAACTATTCCAAAAGATTCAAGAAATGGTAGAGGAAGAAAGCAATCTGGTATTTGTTTTGATTGATGAAGTCGAAAGCCTCGCTGCTGCTAGAAAAGCTGCTTTGTCTGGTTCTGAACCTTCAGATTCTATTCGGGTTGTCAATGCATTACTAACTCAGATGGATAAGCTAAAATCATCTCCAAATGTGATCATTCTAACCACATCCAACATTACCGCTGCTATCGATATTGCTTTTGTTGACCGAGCTGATATCAAAGCATATGTTGGTCCACCAACTCTTCAAGCTCGATATGAAATATTAAGGTCTTGCTTGCAGGAACTCATGCGTACAGGGATATTAACTAGTTTTGAGGGTTGTAAGAATATCGTACTTCCAAATTATGCTAGTGCAAAACAAAGGATGAATGCACCCAATTTTCACGAGGCTACTGCATCCATGCAACTGTGCAAAAAACTAGTTGAAACTGCAGAGGCATGCGAGGGAATGAGTGGAAGGTCTCTCAGAAAGCTTCCATTTTTGGCACATGCTGCACTTGCAAATCCTTTTGATTGCAACCCTATCAAGTTCTTAAGTACAATGGTAGATACAGCAAAGAGGGAGCGATCTGAGCTTCCCGATTAA 1356 0.4322 MSSPMETEQNLQIDQNGAASQHSPPPPLPPEDKVLVPIEVCLKPSSTASIHDVRSAIEGMLEKRSLSYNGGPIPVPVDEPFLADNVQRICVCDAGEGMQNDNVLLFWQVKPVVHVFQLSEEGPCEDISSDGQSSSFNEWILPAKEFDGMWESLIYESGLKQRLLRYAASALLFTEKAVDPFLVSWNRIILLHGPPGTGKTSLCKALAQKLSIRFNSRFTQAQLVEVNAHSLFSKWFSESGKLVAKLFQKIQEMVEEESNLVFVLIDEVESLAAARKAALSGSEPSDSIRVVNALLTQMDKLKSSPNVIILTTSNITAAIDIAFVDRADIKAYVGPPTLQARYEILRSCLQELMRTGILTSFEGCKNIVLPNYASAKQRMNAPNFHEATASMQLCKKLVETAEACEGMSGRSLRKLPFLAHAALANPFDCNPIKFLSTMVDTAKRERSELPD 451
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi3g03965 451 MobiDBLite consensus disorder prediction 1 21 - -
Vivi3g03965 451 FunFam pachytene checkpoint protein 2 homolog 129 351 - -
Vivi3g03965 451 Gene3D - 128 352 IPR027417 -
Vivi3g03965 451 SMART AAA_5 185 337 IPR003593 GO:0016887
Vivi3g03965 451 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 141 420 IPR027417 -
Vivi3g03965 451 PRINTS ATP-dependent Clp protease ATP-binding subunit signature 189 207 IPR001270 GO:0005524
Vivi3g03965 451 PRINTS ATP-dependent Clp protease ATP-binding subunit signature 303 317 IPR001270 GO:0005524
Vivi3g03965 451 MobiDBLite consensus disorder prediction 1 33 - -
Vivi3g03965 451 PANTHER PACHYTENE CHECKPOINT PROTEIN 2 29 448 IPR044539 -
Vivi3g03965 451 CDD RecA-like_Pch2-like 135 333 - -
Vivi3g03965 451 Pfam ATPase family associated with various cellular activities (AAA) 189 334 IPR003959 GO:0005524|GO:0016887
Vivi3g03965 451 ProSitePatterns AAA-protein family signature. 307 326 IPR003960 GO:0005524|GO:0016887
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi3g03965 Vivi-Chr3 68766531 68773396 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi3g03965 189 355 Calmodulin-binding Proteins AT3G56690 29.586 4.64e-13 69.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi3g03965 K22399 - gmx:100795009 781.171
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi3g03965 3 68766531 68773396 Vivi3g03965 3 68766531 68773396 ECH