Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi3g03955 ATGGAATCTAAACCCGTAAACATTAAGCTTCTCTGTAGCTACGGTGGCAAGATCCTCCCTCGATCAACCGATGGTGAACTCCGTTACGTCGGCGGTCACACCAGAGTTCTTGCCGTTAATCGTTCAATTTCGTTTTCAGAATTGATTGAGAAGCTTCGAGAATTCTGTGGTTCATCTGTGAAATTAAGGTGTCAATTACCAAAAGGAGACTTGGAAACGTTGATCTCCATCACAAACGATGAAGATTTGGCTCAAATAATCGATGAATACGACCGTGCCTCGTTGAAATTAACTCATCCGTTGAAGATCAGAGCTGTTCTTTCTCCGCCGAAATCGGTGTTGAAAGTTTCTCCCAATCCGTCGTCTGCGTCCTCAAGTGCTAGTCGTTCTCCGTACAGATCACCTTATACTTCATCTGAATCACCACCGTACGCGGCGTCGTATAGAATCGGACGTTACAGTCGCTCGCCGAGGGCGCCGGTAGGGTACTCGTTCGGCGCCAGGAATGGATCGGCGAAAGCCTATTGCTACACGGGCCACCAAATCGAGAGAGGACCCAGGCCCTTGTATTGTGGGCCTCGTTTCAATAATTACTGCCATTAA 603 0.4793 MESKPVNIKLLCSYGGKILPRSTDGELRYVGGHTRVLAVNRSISFSELIEKLREFCGSSVKLRCQLPKGDLETLISITNDEDLAQIIDEYDRASLKLTHPLKIRAVLSPPKSVLKVSPNPSSASSSASRSPYRSPYTSSESPPYAASYRIGRYSRSPRAPVGYSFGARNGSAKAYCYTGHQIERGPRPLYCGPRFNNYCH 200
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi3g03955 200 Gene3D - 28 107 - -
Vivi3g03955 200 CDD PB1_UP2 11 107 - -
Vivi3g03955 200 SMART PB1_new 22 108 IPR000270 GO:0005515
Vivi3g03955 200 PANTHER OS05G0427100 PROTEIN-RELATED 3 129 - -
Vivi3g03955 200 MobiDBLite consensus disorder prediction 112 143 - -
Vivi3g03955 200 Pfam PB1 domain 25 97 IPR000270 GO:0005515
Vivi3g03955 200 SUPERFAMILY CAD & PB1 domains 24 113 - -
Vivi3g03955 200 MobiDBLite consensus disorder prediction 114 143 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi3g03955 Vivi-Chr3 68571629 68572625 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi3g03955 3 92 MAP Kinase Kinase Kinase AT5G57610 46.667 1.79e-25 101
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi3g03955 - - vra:106761207 235.343
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi3g03955 3 68571629 68572625 Vivi3g03955 3 68571629 68572625 ECH
Vivi1g02187 1 45926059 45927082 Vivi3g03955 3 68571629 68572625 PCT