Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi3g03949 ATGTCTTTTAGGTGGGCTCAAATTGCAGCTCAACTACCAGGGAGAACAGATAATGAGATAAAAAACTTTTGGAATTCATGTTTGAAGAAGAGGCTGATGAAGCAAGGGATTGATCCAGCTACACATAAGCCATTCTTCAATATTAATACTGAATCAGTTCTAAAGGAAGAGAATGAAAAATCATCAATGCTAATGCCGACACCGTCTCAATCTCAATCTCAACCTCAAAGAACTCTATCTTCACAGGAATATTATTATTCAGAAGCACTTCTAATGAATGATTTGATGAATTATCATTATAATATTGGTGGTTTAACTTTTCCAGAATCTTCAAGAAAAATCCTCATGAATTCGAATAAGCCATTATTTGATCCATTATGCTATAATCTAAGTGTGAGCAATTATTATCAGCCGAAACCGAATCTGTTTGGAACTGATTCAAACTATTTCTTCTCTTCAATGCCTTGTCTAAATAGTTCAGACAACAATGACTCGGTTTCCAAATATAGTTCTCTTTTGGTGAATGAAAACTCAAGCAATGGTTGTTCAACTATGAATGATTATGTAGGGTGTGAAATGAGCAACATGATTGAAAATGCAGGTGGATTATTGTCATGGGAAGGTGAGAACAATGTTTTGGATCCTTTGTTACAGTTTGAAGTGAATGCAGTAAAATGTGAAGAGTTGTTGATCAACAAGACAAGTTCATGGGAAGAAGGACAGTTTCTGACGACTGATAATGATTCAATGAATTTCAGTACCTATCCTTTGACGTCAGTGTCAGAAAATCTAAGTAATGAAGCTAATTTTGATGTATTTCAGCATTTATGA 831 0.3454 MSFRWAQIAAQLPGRTDNEIKNFWNSCLKKRLMKQGIDPATHKPFFNINTESVLKEENEKSSMLMPTPSQSQSQPQRTLSSQEYYYSEALLMNDLMNYHYNIGGLTFPESSRKILMNSNKPLFDPLCYNLSVSNYYQPKPNLFGTDSNYFFSSMPCLNSSDNNDSVSKYSSLLVNENSSNGCSTMNDYVGCEMSNMIENAGGLLSWEGENNVLDPLLQFEVNAVKCEELLINKTSSWEEGQFLTTDNDSMNFSTYPLTSVSENLSNEANFDVFQHL 276
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi3g03949 276 ProSiteProfiles Myb-like domain profile. 1 28 IPR001005 -
Vivi3g03949 276 SUPERFAMILY Homeodomain-like 3 38 IPR009057 -
Vivi3g03949 276 MobiDBLite consensus disorder prediction 57 78 - -
Vivi3g03949 276 PANTHER MYB DOMAIN PROTEIN 55 4 184 - -
Vivi3g03949 276 MobiDBLite consensus disorder prediction 62 78 - -
Vivi3g03949 276 Gene3D - 2 78 - -
Vivi3g03949 276 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 1 32 IPR017930 -
Vivi3g03949 276 CDD SANT 4 25 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi3g03949 Vivi-Chr3 68436101 68437450 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi3g03949 4 67 MYB Transcription Factor Family AT1G57560 62.500 3.84e-20 85.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Vivi3g03949 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi3g03949 K09422 - gmx:100811140 214.927