Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi3g03944 ATGGCATCATCAAGCTCATACAATTCACCATGTGCAGCCTGCAAATTCCTTCGTCGAAAATGCATGCCAGGTTGCATCTTTGCACCATACTTTCCACCAGAAGAGCCACAAAAATTTGCAAACGTTCACAAGATCTTCGGCGCAAGCAACGTGACTAAGATCCTCAACGAGCTCCTCCCTCACCAGAGAGAAGATGCAGTGAATTCACTCGCTTATGAAGCCGAAGCTCGCGTGAGGGATCCAGTTTATGGTTGTGTTGGTGCTATCTCTTTCCTTCAGAGACAAATTCAAAGGCTTCAAAAGGAACTTGATTCCGCTAACGCTGATCTTCTCCGCTTCGCTTACAATGATCTCTCGCCTAACTCGTCTCTTCCGCCTCTTCCTCCTCTTGTTGTTCAATCTTCATTTCATCATCAACCTCAGAGACAGTTCAGTTCGAGATTCGGTATCGGAAATAACAACGTTGAAGCAAGTGGTTTTTACTCTTTTCCTTATGCTATTCCATGGAATGATAACATTAACACCTCTACTACTGAGGATATAAATGGAGGTTTAGGAGCAAGAGGAGGAGTAGGAGGAGGTAATAATTTGTGA 594 0.4411 MASSSSYNSPCAACKFLRRKCMPGCIFAPYFPPEEPQKFANVHKIFGASNVTKILNELLPHQREDAVNSLAYEAEARVRDPVYGCVGAISFLQRQIQRLQKELDSANADLLRFAYNDLSPNSSLPPLPPLVVQSSFHHQPQRQFSSRFGIGNNNVEASGFYSFPYAIPWNDNINTSTTEDINGGLGARGGVGGGNNL 197
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi3g03944 197 Coils Coil 89 109 - -
Vivi3g03944 197 ProSiteProfiles LOB domain profile. 9 110 IPR004883 -
Vivi3g03944 197 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 8 135 - -
Vivi3g03944 197 Pfam Lateral organ boundaries (LOB) domain 10 107 IPR004883 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi3g03944 Vivi-Chr3 68337373 68339642 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi3g03944 1 130 AS2 family AT5G63090 75.676 1.12e-73 218
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Vivi3g03944 LOB 3.1e-42 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi3g03944 - - gmx:100775922 274.248