Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi3g03934 ATGGATATCAACATCAAAATAAAAGGAGAAATAGAGAAGGTGAATGGGAAAGAACTAACTTATAATGAATTTGTTGAAAGATATATGGAGAAAAACAAGCCAGTGGTGCTAACTGGATTAATGGACGATCATTGGAAGGCTTGCACTGATTGGGTTAGCCCTAATGGAAAACCTAATCTCCAATTTTTCTCCACTCATTTTGGTTCCTCCAAAGTTCAGGTTGCAGACTGTGATACCAGAGATTTTACTGATCAAAAAAGGGAGGAGATGTTGGTATCCGATTTCGTTGGACTTTGCTTTAAAGACGAGGGTTCTGTAGTTCAGTGCAGTAATCAAAATGGTGTAAGTAATAGTGACTCTGCATCTGTTCCGTATTTGAAGGATTGGCATTTTGTGAAGGAGTATCCTGATTACGTACCATACATCACTCCGATGTTCTTTTGTGATGATTGGCTCAACTTGTATCTCGATAACTTCAGAATGAATACATATTCTGACAGAGACCAACAAAATAAGGAAATATGTTGCTCTGACTATCGTTTTGTTTACATGGGAGTTAAAGGATCTTGGACTCCTCTACATGCTGATGTTTTCAGGTCGTATAGCTGGTCAGCAAATGTCTGTGGAAAGAAGAGATGGTTTTTCCTAGATCCTTCTCAGTGTCATCTTCTGTTTGACAGGAATTTGAAAAACTGTGTATATAATATCTTTGATGAAGTCTCTGACTCAAAATATCCTAATTTTAAAAAGGCTATCTGGTTAGAATGCACACAAGAAGCAGGGGAAATCATATTTGTTCCCAGCGGATGGTATCACCAAGTTCATAATTTGGAGGATACAATATCTATAAACCACAATTGGTTCAATGCGTATAACCTTTCTTGGGTGTGGAATTTACTTTTAAGGGACTACAATGAGGCCAAGGAATACATAGAAGACATCAAGGATATATGTGATGATTTTGAAGGTCTCTGCCAGCGCAATCTTGCTGCTAACACAGGGATGAATTTTTATGACTTCCTTACTTTCATTTCATACTTCACCTTGGCCAACTTGGTATTGCTTTGCTACATAAATAGAAGAGATGGCAGTACAAATGGGAACTCATCAAGAGTAGCTCAGCATGTATCCATGAATGTTGGGTCTATTAGGAAGATTGCATCAGAGATGAAACATGGTGGTGGTCTAGAAGGGAATCATGATTTGGTTGTAGATATGTTAAAAACATTTGAAGATCCTAGGTTTTCCAAATTCTGCATGCAGGTGGGAAAAACATATTTAATGATACACGGGCAATCTGATTTGTTCTCTGATTTTGTGGGTGCTTCCATGGTTGATTTGATGGAAATCGGTATTTTGAAAGCATACACTTCTTCTAAGGTTTATGCACCTGAAGACCTCATCAAATTTATAGACAACGCCATTGCAAAACTGGGGGACTTTTACATCGAGTCATCTGTACAGCGTGTTACTTGA 1476 0.3801 MDINIKIKGEIEKVNGKELTYNEFVERYMEKNKPVVLTGLMDDHWKACTDWVSPNGKPNLQFFSTHFGSSKVQVADCDTRDFTDQKREEMLVSDFVGLCFKDEGSVVQCSNQNGVSNSDSASVPYLKDWHFVKEYPDYVPYITPMFFCDDWLNLYLDNFRMNTYSDRDQQNKEICCSDYRFVYMGVKGSWTPLHADVFRSYSWSANVCGKKRWFFLDPSQCHLLFDRNLKNCVYNIFDEVSDSKYPNFKKAIWLECTQEAGEIIFVPSGWYHQVHNLEDTISINHNWFNAYNLSWVWNLLLRDYNEAKEYIEDIKDICDDFEGLCQRNLAANTGMNFYDFLTFISYFTLANLVLLCYINRRDGSTNGNSSRVAQHVSMNVGSIRKIASEMKHGGGLEGNHDLVVDMLKTFEDPRFSKFCMQVGKTYLMIHGQSDLFSDFVGASMVDLMEIGILKAYTSSKVYAPEDLIKFIDNAIAKLGDFYIESSVQRVT 491
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi3g03934 491 Gene3D Cupin 3 288 - -
Vivi3g03934 491 Pfam Cupin-like domain 22 287 IPR041667 -
Vivi3g03934 491 ProSiteProfiles JmjC domain profile. 149 304 IPR003347 -
Vivi3g03934 491 PANTHER ARGININE DEMETHYLASE AND LYSYL-HYDROXYLASE JMJD 5 340 - -
Vivi3g03934 491 SMART cupin_9 124 304 IPR003347 -
Vivi3g03934 491 SUPERFAMILY Clavaminate synthase-like 9 316 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi3g03934 Vivi-Chr3 68135858 68142422 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi3g03934 9 296 Glycosyltransferase AT1G78280 24.080 5.74e-14 72.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Jumonji Vivi3g03934 Cupin_8 1.9e-24 CL0029
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi3g03934 - - gmx:100803814 796.193
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi3g03934 3 68135858 68142422 Vivi3g03934 3 68135858 68142422 ECH