Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi3g03933 ATGTTGGTATCCGATTTCGTTGGACTTTGCTTTAAAGACGAGGGTTCTGTAGTTCAGTGCAGTAATCAAAATGGTGTAAGTAATAGTGACTCTGCATCTGTTCCGTATTTGAAGGATTGGCATTTTGTGAAGGAGTATCCTGATTACGTACCATACATCACTCCGATGTTCTTTTGTGATGATTGGCTCAACTTGTATCTCGATAACTTCAGAATGAATACATATTCTGACAGAGACCAACAAAATAAGGAAATATGTTGCTCTGACTATCGTTTTGTTTACATGGGAGTTAAAGGATCTTGGACTCCTCTACATGCTGATGTTTTCAGGTCGTATAGCTGGTCAGCAAATGTCTGTGGAAAGAAGAGATGGTTTTTCCTAGATCCTTCTCAGTGTCATCTTCTGTTTGACAGGAATTTGAAAAACTGTGTATATAATATCTTTGATGAAGTCTCTGACTCAAAATATCCTAATTTTAAAAAGGCTATCTGGTTAGAATGCACACAAGAAGCAGGGGAAATCATATTTGTTCCCAGCGGATGGTATCACCAAGTTCATAATTTGGAGGATACAATATCTATAAACCACAATTGGTTCAATGCGTATAACCTTTCTTGGGTGTGGAATTTACTTTTAAGGGACTACAATGAGGCCAAGGAATACATAGAAGACATCAAGGATATATGTGATGATTTTGAAGGTCTCTGCCAGCGCAATCTTGCTGCTAACACAGGGATGAATTTTTATGACTTCCTTACTTTCATTTCATACTTCACCTTGGCCAACTTGGTATTGCTTTGCTACATAAATAGAAGAGATGGCAGTACAAATGGGAACTCATCAAGAGTAGCTCAGCATGTATCCATGAATGTTGGGTCTATTAGGAAGATTGCATCAGAGATGAAACATGGTGGTGGTCTAGAAGGGAATCATGATTTGGTTGTAGATATGTTAAAAACATTTGAAGATCCTAGGTTTTCCAAATTCTGCATGCAGGTGGGAAAAACATATTTAATGATACACGGGCAATCTGATTTGTTCTCTGATTTTGTGGGTGCTTCCATGGTTGATTTGATGGAAATCGGTATTTTGAAAGCATACACTTCTTCTAAGGTTTATGCACCTGAAGACCTCATCAAATTTATAGACAACGCCATTGCAAAACTGGGGGACTTTTACATCGAGTCATCTGTACAGCGTGTTACTTGA 1209 0.3813 MLVSDFVGLCFKDEGSVVQCSNQNGVSNSDSASVPYLKDWHFVKEYPDYVPYITPMFFCDDWLNLYLDNFRMNTYSDRDQQNKEICCSDYRFVYMGVKGSWTPLHADVFRSYSWSANVCGKKRWFFLDPSQCHLLFDRNLKNCVYNIFDEVSDSKYPNFKKAIWLECTQEAGEIIFVPSGWYHQVHNLEDTISINHNWFNAYNLSWVWNLLLRDYNEAKEYIEDIKDICDDFEGLCQRNLAANTGMNFYDFLTFISYFTLANLVLLCYINRRDGSTNGNSSRVAQHVSMNVGSIRKIASEMKHGGGLEGNHDLVVDMLKTFEDPRFSKFCMQVGKTYLMIHGQSDLFSDFVGASMVDLMEIGILKAYTSSKVYAPEDLIKFIDNAIAKLGDFYIESSVQRVT 402
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi3g03933 402 SUPERFAMILY Clavaminate synthase-like 5 227 - -
Vivi3g03933 402 ProSiteProfiles JmjC domain profile. 60 215 IPR003347 -
Vivi3g03933 402 PANTHER ARGININE DEMETHYLASE AND LYSYL-HYDROXYLASE JMJD 23 252 - -
Vivi3g03933 402 Pfam JmjC domain, hydroxylase 93 198 IPR003347 -
Vivi3g03933 402 Gene3D Cupin 1 200 - -
Vivi3g03933 402 SMART cupin_9 35 215 IPR003347 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi3g03933 Vivi-Chr3 68135850 68142208 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi3g03933 36 207 Glycosyltransferase AT1G78280 26.923 4.18e-12 66.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Jumonji Vivi3g03933 JmjC 8.2e-18 CL0029
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi3g03933 - - gmx:100803814 655.21