Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi3g03920 ATGTCACCTGTGACAGAGAGTCCGATAAAGCCAAATCCAAGAGGTGGCGGAGAAACATGTGCAGAAACTGGTATCGGTGTCTTTTTCAGCAAGATTGTCAAGTTAGGAGAAGTCAGAATAAACGGAATGGTTGAAAGACTACAATTATCTCACCAGATAAGGGAGAATGTATATTGTCTTTTCCAGCAAATCCTAAACCAATGGACATCTCTCTTCTTCAACCGCCATATTGACCGAATCAATACGAGTTGCTGCTATGGAGTTGCGAAGATATCACAATTGAACCTAACTTTTAGGGAGATTATATACAACTACAGAAAGCAACTCCAATGCAAACTACAAGTTTTTCGCAACATATTCGTTGACTGGTCATCCACACGCCGTAAAACACAATTAGCTAAGCAATAA 408 0.3995 MSPVTESPIKPNPRGGGETCAETGIGVFFSKIVKLGEVRINGMVERLQLSHQIRENVYCLFQQILNQWTSLFFNRHIDRINTSCCYGVAKISQLNLTFREIIYNYRKQLQCKLQVFRNIFVDWSSTRRKTQLAKQ 135
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi3g03920 135 Pfam Retinoblastoma-associated protein B domain 26 131 IPR002719 GO:0005634|GO:0051726
Vivi3g03920 135 Gene3D - 1 134 - -
Vivi3g03920 135 PANTHER RETINOBLASTOMA-ASSOCIATED PROTEIN RB -RELATED 6 130 IPR028309 GO:0006357|GO:0051726
Vivi3g03920 135 SUPERFAMILY Cyclin-like 23 124 IPR036915 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi3g03920 Vivi-Chr3 67893630 67897312 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi3g03920 7 133 Core Cell Cycle Gene Families AT3G12280 68.504 1.86e-57 189
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR RB Vivi3g03920 RB_B 2e-26 CL0065
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi3g03920 K04681 - vvo:131656025 278.87