Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi3g03909 ATGGATCTTGAGACAAAGCTTACAGAAAATTTCTACTTCAAACCCAACATGAAAAATCAAGAGAATCCTTTCATTGTTCCTTCATCTCAAGGATTCTTACAAGATTTTAATCACATTGATAAGTTTAATCCGAATGGTACTTTTTTCAATCATGTTTCCGGGGTCCAAAACTTTGGTCCTAGTGATAAATTTTCTTTTGCTGATAATGATTTCAAGCCATTTGTGGAGAATAGTGGTAATGGTAATGGTCATGCTTTTGTAATGGACAATTTTCTTCATGGAGGTTATGAGTTGAACAATCTTTCTCAGAGGAATAATCAAGTCGAAACGATGGTTACAAACCAAAGTAATTATTTTCCCTTTAATATTAATATTCCTCAAGAAACCAAACCTTTGAGTTTTGTTGCACCAGATGAAGTTTCATGCATGCCTTCAATGAGATATTACAAAAGATTTGGCATGAATAGAAACAGCAAAGCATATCCTCTCACAAGAAAGATAGAAAAAATTCGTAAGAATTCCAACGTTGTGAAAGGACAATGGACTGTAGAAGAAGATGGGTTGTTGATTCAGCTGGTTGAACAAAATGGTTTGAGAAAATGGTCTCGTATTGCTCAGATGTTGCCGGGTAGAATTGGAAAACAATGCCGAGAGCGATGGCATAATCATCTAAGGCCTGATATTAAGAAGGACATATGGAGTGAGGAAGAAGACAGAATATTGATCAAAGCTCATGGAGAGATAGGAAACAAATGGGCAGAGATAGCTAAAAAGTTACCAGGAAGAACTGAAAACTCAATAAAAAACCATTGGAATGCAACCAAGAGAAGACAATATTCTAAAAGAAAGTGTCGCTCGAAATACCCTAGAGGAAATCTTCTACAAGATTATATCAAGAGCTTGAACTTAGACAAAAACCCTCCAAAAGATTATAGAAAAAAATCATCAACTAATGTTAGTGTCATGAAAAACAATACCAACAAAGACACAACAATAGCAATATCAGCTCAGTCTCAATCTCAGTCTCAGAAAGCTGAACAATTTTGTCCAAGTGATGAGTGTTTGGTTCCGAGTTGTGGTTTTGATGATGTTCCAGATTTTTGTTTTGATGAGAGTTTGTTTCAAGATGGGTGTAGTATTGATTCTCTTCTGGATGATGTGAAAATTATGGAAGGAAAAAAACATTGTGATGTTGAGAAAGAGATTATGGAATCTATGTTTGGAGCTGAAGTTAAGAAGGAGATGGATTTGATTGATATGGTTTTTTCATGTCAATGA 1278 0.3498 MDLETKLTENFYFKPNMKNQENPFIVPSSQGFLQDFNHIDKFNPNGTFFNHVSGVQNFGPSDKFSFADNDFKPFVENSGNGNGHAFVMDNFLHGGYELNNLSQRNNQVETMVTNQSNYFPFNINIPQETKPLSFVAPDEVSCMPSMRYYKRFGMNRNSKAYPLTRKIEKIRKNSNVVKGQWTVEEDGLLIQLVEQNGLRKWSRIAQMLPGRIGKQCRERWHNHLRPDIKKDIWSEEEDRILIKAHGEIGNKWAEIAKKLPGRTENSIKNHWNATKRRQYSKRKCRSKYPRGNLLQDYIKSLNLDKNPPKDYRKKSSTNVSVMKNNTNKDTTIAISAQSQSQSQKAEQFCPSDECLVPSCGFDDVPDFCFDESLFQDGCSIDSLLDDVKIMEGKKHCDVEKEIMESMFGAEVKKEMDLIDMVFSCQ 425
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi3g03909 425 Gene3D - 177 230 - -
Vivi3g03909 425 FunFam Transcription factor MYB119 231 295 - -
Vivi3g03909 425 Pfam Myb-like DNA-binding domain 233 272 IPR001005 -
Vivi3g03909 425 Pfam Myb-like DNA-binding domain 178 224 IPR001005 -
Vivi3g03909 425 ProSiteProfiles Myb-like domain profile. 225 275 IPR001005 -
Vivi3g03909 425 Gene3D - 232 292 - -
Vivi3g03909 425 FunFam Transcriptional activator Myb isoform A 177 230 - -
Vivi3g03909 425 CDD SANT 233 275 IPR001005 -
Vivi3g03909 425 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 173 228 IPR017930 -
Vivi3g03909 425 PANTHER MYB PROTEIN-RELATED 154 334 - -
Vivi3g03909 425 ProSiteProfiles Myb-like domain profile. 173 224 IPR001005 -
Vivi3g03909 425 CDD SANT 181 224 IPR001005 -
Vivi3g03909 425 SMART sant 177 226 IPR001005 -
Vivi3g03909 425 SMART sant 229 277 IPR001005 -
Vivi3g03909 425 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 229 279 IPR017930 -
Vivi3g03909 425 SUPERFAMILY Homeodomain-like 175 271 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi3g03909 Vivi-Chr3 67721558 67723453 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi3g03909 52 387 MYB Transcription Factor Family AT4G18770 47.899 7.48e-95 290
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Vivi3g03909 Myb_DNA-binding 1.5e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi3g03909 K09422 - gmx:102662267 488.804