Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi3g03883 ATGAATGAAAAGAATGATGGATTTATGAGAGCTGATCAAATTGATCTCAAGAACATAGATGAACAACTTGAGAGACACTTCAATAAAGCATTGCCTACAGCTCATAATGATGACTCAAACTCTGGAACTGATGATGGTGCTGTCTTCAACAAGAATCAAAGACAAGAGTGGGAAATTGATCCTTCTAACCTCATCATCAAGAGTGTTATAGCTCGTGGTACTTTCGGTACCGTTCATCGTGGTGTTTATGATGCTCAAGATGTTGCTGTTAAAATGCTGGACTGGGGTGAAGAAGGGCACAGGACAGAAGCTGAAATTGCTGCACTCAGGTCTGCGTTCACGCATGAAGTCGTTGTTTGGCATAAACTCGATCACCCTAATGTCACAAAGTTTATAGGGGCAACAATAGGGTCATCTGAATTGCAGCTACAAACTGAGAATGGTGTAATTAGCATGCCGAGCAATATCTGTTGCGTGGTTGTAGAGTATCTTCCAGGAGGTGCACTCAAATCTTTCTTAATAAAGAATAGGAGGAGGAAGTTAGCTTTCAAGATCGTCGTTCAACTAGCACTCGATATGGCTAGAGGGCTGAATTATCTTCACTCTCAGAAGATTGTCCATAGAGATGTAAAGACAGAGAACATGCTGTTGGATAAGACACGAACTGTTAAAATTGCTGATTTCGGAGTTGCGCGTATTGAAGCATTGAATCCTAATGACATGACCGGGGAGACGGGAACACTTGGTTACATGGCTCCTGAGGTTTTAAATGGAAACCCTTATAACAGGAAATGTGATGTATATAGTTTTGGCATCTGTTTATGGGAAATATATTGTTGTGACATGCCATATCCTGACCTCAGTTTCTCAGAGATTACATCAGCCGTTGTTCGCCAGAATGTTAGACCTGAAATACCAAAATGCTGTCCAAGTTCTTTAGCAAATGTAATGAAGAGATGCTGGGATGCGAATCCTGATAAGCGACCTGAAATGGATGAGGTAGTTGCCATGTTGGAGGCTATTGACACATCCAAAGGTGGAGGTATGATCCCTTTTGATCAGCAACATGGTTGTCTCTGCTTCGGTAAGCGCCGAGGGCCTTGA 1104 0.4221 MNEKNDGFMRADQIDLKNIDEQLERHFNKALPTAHNDDSNSGTDDGAVFNKNQRQEWEIDPSNLIIKSVIARGTFGTVHRGVYDAQDVAVKMLDWGEEGHRTEAEIAALRSAFTHEVVVWHKLDHPNVTKFIGATIGSSELQLQTENGVISMPSNICCVVVEYLPGGALKSFLIKNRRRKLAFKIVVQLALDMARGLNYLHSQKIVHRDVKTENMLLDKTRTVKIADFGVARIEALNPNDMTGETGTLGYMAPEVLNGNPYNRKCDVYSFGICLWEIYCCDMPYPDLSFSEITSAVVRQNVRPEIPKCCPSSLANVMKRCWDANPDKRPEMDEVVAMLEAIDTSKGGGMIPFDQQHGCLCFGKRRGP 367
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi3g03883 367 PIRSF ILK 34 347 - -
Vivi3g03883 367 Gene3D Transferase(Phosphotransferase) domain 1 164 356 - -
Vivi3g03883 367 SUPERFAMILY Protein kinase-like (PK-like) 50 338 IPR011009 -
Vivi3g03883 367 CDD STKc_MAP3K-like 70 338 - -
Vivi3g03883 367 FunFam Serine/threonine-protein kinase HT1 164 349 - -
Vivi3g03883 367 PANTHER SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED 50 341 - -
Vivi3g03883 367 SMART serkin_6 64 341 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi3g03883 367 ProSitePatterns Serine/Threonine protein kinases active-site signature. 205 217 IPR008271 GO:0004672|GO:0006468
Vivi3g03883 367 PRINTS Tyrosine kinase catalytic domain signature 161 174 IPR001245 GO:0004672|GO:0006468
Vivi3g03883 367 PRINTS Tyrosine kinase catalytic domain signature 265 287 IPR001245 GO:0004672|GO:0006468
Vivi3g03883 367 PRINTS Tyrosine kinase catalytic domain signature 309 331 IPR001245 GO:0004672|GO:0006468
Vivi3g03883 367 PRINTS Tyrosine kinase catalytic domain signature 199 217 IPR001245 GO:0004672|GO:0006468
Vivi3g03883 367 Gene3D Phosphorylase Kinase; domain 1 52 147 - -
Vivi3g03883 367 Pfam Protein tyrosine and serine/threonine kinase 66 338 IPR001245 GO:0004672|GO:0006468
Vivi3g03883 367 FunFam Kinase suppressor of Ras 1 53 148 - -
Vivi3g03883 367 ProSiteProfiles Protein kinase domain profile. 64 341 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi3g03883 Vivi-Chr3 66998315 67000358 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi3g03883 2 367 MAP Kinase Kinase Kinase AT3G22750 63.784 0.0 523
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TKL-Pl-4 Vivi3g03883 PK_Tyr_Ser-Thr 4.4e-63 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi3g03883 - - mtr:11415349 666.381