Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi3g03882 ATGGTAATGGAGATTGTCATTTCTTTGATAATCTTATTCGTCGGGATAGCTATTCTGGTTTCTATCCATTTCTGCATAGTTGGAAGAGCTTTTACAAGGGATAATAATAGTGCAAACATTCAAGTCCAGAGTAGTAGTAGTACTAGTACTAGCAGAACTACAAAAGGAATGTTTGGTGACAATATTGGTGACTTGAAGAACCTTCCTTGCTTTGATTATGTGGAACAAGAAAAAGGAAACAATAATCTCGTCGACTGTGCTGTTTGCTTGGAGAGTTTTAAGGTTGGTGATGCTTGTAGATTGTTGCCTAATTGCAGACACAGTTTTCATGTTCAGTGTATAGATATCTGGATTCTCAAGAAACCATTTTGTCCGATTTGTAGAACATGGGTTCATTCAAGAGTAGTTATGAGAGAAGAAAGTGCTGTTTCTGAGTCTGATATTGTAGAAATTGAAATACCATAG 465 0.3634 MVMEIVISLIILFVGIAILVSIHFCIVGRAFTRDNNSANIQVQSSSSTSTSRTTKGMFGDNIGDLKNLPCFDYVEQEKGNNNLVDCAVCLESFKVGDACRLLPNCRHSFHVQCIDIWILKKPFCPICRTWVHSRVVMREESAVSESDIVEIEIP 154
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi3g03882 154 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF13-LIKE 1 135 - -
Vivi3g03882 154 SMART ring_2 86 127 IPR001841 -
Vivi3g03882 154 SUPERFAMILY RING/U-box 75 134 - -
Vivi3g03882 154 ProSiteProfiles Zinc finger RING-type profile. 86 128 IPR001841 -
Vivi3g03882 154 FunFam RING-H2 finger protein ATL2K 60 134 - -
Vivi3g03882 154 Pfam RING-like zinc finger 85 114 IPR001841 -
Vivi3g03882 154 CDD RING-H2_PA-TM-RING 85 128 - -
Vivi3g03882 154 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 36 133 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi3g03882 Vivi-Chr3 66969227 66969691 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi3g03882 65 149 Rapid Response to Elicitors AT3G16720 37.647 5.39e-18 77.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi3g03882 - - vvo:131658249 292.352