Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi3g03880 ATGCCTCCTAACATCCGTCCACCTCCAACCCACCGCCGTCCCCTATCCTTCCCCGCCGTACACCCCTGCGAATCCATCTCTCCAACAACCCTCCTCACTTCCTTAATCACTCTCTCCCAAAACATATCCACTTTCCAACCAAACTCCTTCCCCACTCAAAAACGAAACTCCCGAGAAACAAAACGCCAAATCCAAATTCTTCTCATATTCTTCCAAGACCTCCAATCCCATCCCTCTCCCATCCCAAAACCAATCATTCCTCTCTTCTCCAACCTTCACTTCACCCTCCAGAAAATCCACTTCTTATTCCAAGACTGTTCCCTCCAAAACGCACGCCTATGGTTACTCCTCAAATCCCAATTCATAGCCACACAGTTTCACGTTCTCATTCGTTCCGTCGCAGAATCTCTCCACGCGTTACCACTCAACCTCGTCGACGTATGCGACGAGGTTAAAGAGGTAATTCAATTACTAACCAAACAAACCGAAACAATCAATCTTGTACTCGACCATAACGACGAACGCGAAACCAAACGCGTCATTTCAATTCTAAATCAATTCGAAAAAGGAACCGAACCAAGCGTGGATTCCATCAAACAATTACTATATTACCTCGAAATCAAAACTTGGTTAGATTGCAACGAAGAGATCAAATTCCTCCAATACCAAATAGAATTTAAACAAGAACATGAACAAGAACCAGAAGAACCAGAGAAAGAGATTTCTCTATTGAGTAGTTTGAAATGTTTTCTATGCTACTGTCGTGCGGTTCTTTTCGAAACTCTCGATTTTCAATCAATAACCCGTAACAGATCCGAAACCAGGTGCAGGCGCAGCGTAGAGATGTCAAGCTGCGTCGCACCAGATGATTACCGCTGTCCAATTTCACTCGAGTTAATGATAGATCCTGTAACCGTTTCCACTGGCCAAACATACAACAGAGCTTCCATTCAACAATGGTTTAACTCCGGAAGCATAACCTGTCCGAAAACAGGCGAAAAACTCGCTTCCACAGAGTTTTTCCCCAACACAGCTCTCAAAAGAATTATCCAACAATTCTGTTACGATAACAGAATTTCAGTTTCGCGAACTAAATCACACGTTGGCGTAACTGTAACAACTGTTAATCCTGGTAGTCCTGCAGCAGCACAGGCGATACAGTTCGCGTCGTGGTCAGTTGCTCAGAGATTAGTATTCGGAACAGATGAGCAGAAAAACAAAGCAGCTTATGAGATTGGATTACTCGCGAAATCAAATGTTTTCAATACTGCGTGTTTGATTGAGATGGGAACTGTGCCACCGTTGATTGATCTTGTTTTAGCTTCAGCAACGCAAGAGAATGCGATTTTTGCTCTTTTGAAGCTTTCAAAGCATGGTAATGGTCGCGAAGTTATCATGGAGAGTCGAGGTTTAGATTCTATAGTTACTGTTCTCAGACGAGGTTATAGTTTAGAAGCTCGCAGGATAGCAGCTGGTGTAATATTCTATCTCACTTCGGTGAAAGAGTATAGAAAAATAATAGGTGAAAATTCAAAGGTTGTTTCTGGTTTAGTGGAATTGATAAAGAAAGGAACAATCCGAGGAAAAAAGACCGCGGTGGATGCGATTTTCGGATTGTTATTGCTTCCTAAGAATCATCATAAGGTTCTTGCTTCTGGTGCTGTTCCTGCTATTGTTAGTGTTCTAACTTCTTGGGAGAAATCTGATGTTGTTAGTGATTGTTTGGCGGTTTTGGTAGCATTGGCGGAGAATGTGGACGGTTCGCGTGCTGTATTGGAGGCTTCGGGTTTGTCTATGGTGGTTGGAATTTTGCAATCTGCAACTTCGCGTGCTGAGAAGGAGTACTGTGTTTCCATTTTGGTATCGCTGTGTGCTAATATTGGTGATGAGATTGTTAGTGTTCTGGTGAAAGATGGTTCTGTGATTATGCCTTTGCTTTACGCGATTCTAACGGATGGTACTCCTCTAGCGGAAAAGAAAGCACGAAAACTTATCAATGTGTTGCAAGAATTTGATGAGAAGAAAACTTTGGGCACTTCTGTTTTACACCAAAGATTGCTTCAGTTGAATTAG 2073 0.4269 MPPNIRPPPTHRRPLSFPAVHPCESISPTTLLTSLITLSQNISTFQPNSFPTQKRNSRETKRQIQILLIFFQDLQSHPSPIPKPIIPLFSNLHFTLQKIHFLFQDCSLQNARLWLLLKSQFIATQFHVLIRSVAESLHALPLNLVDVCDEVKEVIQLLTKQTETINLVLDHNDERETKRVISILNQFEKGTEPSVDSIKQLLYYLEIKTWLDCNEEIKFLQYQIEFKQEHEQEPEEPEKEISLLSSLKCFLCYCRAVLFETLDFQSITRNRSETRCRRSVEMSSCVAPDDYRCPISLELMIDPVTVSTGQTYNRASIQQWFNSGSITCPKTGEKLASTEFFPNTALKRIIQQFCYDNRISVSRTKSHVGVTVTTVNPGSPAAAQAIQFASWSVAQRLVFGTDEQKNKAAYEIGLLAKSNVFNTACLIEMGTVPPLIDLVLASATQENAIFALLKLSKHGNGREVIMESRGLDSIVTVLRRGYSLEARRIAAGVIFYLTSVKEYRKIIGENSKVVSGLVELIKKGTIRGKKTAVDAIFGLLLLPKNHHKVLASGAVPAIVSVLTSWEKSDVVSDCLAVLVALAENVDGSRAVLEASGLSMVVGILQSATSRAEKEYCVSILVSLCANIGDEIVSVLVKDGSVIMPLLYAILTDGTPLAEKKARKLINVLQEFDEKKTLGTSVLHQRLLQLN 690
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi3g03880 690 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 553 596 IPR000225 GO:0005515
Vivi3g03880 690 Pfam U-box domain 287 358 IPR003613 GO:0004842|GO:0016567
Vivi3g03880 690 SUPERFAMILY RING/U-box 277 360 - -
Vivi3g03880 690 SUPERFAMILY ARM repeat 403 668 IPR016024 -
Vivi3g03880 690 FunFam RING-type E3 ubiquitin transferase 287 359 - -
Vivi3g03880 690 Gene3D - 378 679 IPR011989 -
Vivi3g03880 690 CDD RING-Ubox_PUB 288 340 IPR045210 -
Vivi3g03880 690 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 267 368 IPR013083 -
Vivi3g03880 690 SMART Ubox_2 290 353 IPR003613 GO:0004842|GO:0016567
Vivi3g03880 690 ProSiteProfiles U-box domain profile. 286 360 IPR003613 GO:0004842|GO:0016567
Vivi3g03880 690 PANTHER U BOX DOMAIN-CONTAINING 57 668 - -
Vivi3g03880 690 SMART arm_5 542 583 IPR000225 GO:0005515
Vivi3g03880 690 SMART arm_5 458 499 IPR000225 GO:0005515
Vivi3g03880 690 SMART arm_5 419 457 IPR000225 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi3g03880 Vivi-Chr3 66959050 66962173 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi3g03880 12 676 U-box Gene Family AT1G10560 37.555 5.12e-143 432
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi3g03880 - - gmx:100810963 753.436