Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi3g03865 ATGGGTGGCAATGGAAAACACAGGTGGAAAATCTCCTTCCATCGTTCTTCTTCATCTCCCTCTAAATCTAAACCCCTTCAACCTCCCAATGAGTTTCTATGCCCTATCACCGGGTCATTAATGTCCGACCCGGTTGTCGTCTCCTCGGGTCAAACCTTCGAACGTCTCTCCGTTCAAGTATGCCAAGATTTAAAATTCTCCCCACTCCTAGAAGACGGGTCCCGACCCGATTTCTCAACCATCATCACCAACTTAGCCATCAAAAAAACCATACTCAACTGGTGCAACAAATCTCATACCCAGCACCCGCCCACACCGGATTACGACTCCATCGAGAAGGTTGTAACAGAAAAAATAGCGGCGGCCGCGGCGGAGAAGGAAGAACCGGTTAGGGTTTCTGAAACGGAGCTGCTCAACGCGGTGGCGGATAACCCGCCGATGATATACTCCCACGCTGCTACTGAGGTAGGGCCACGTGTCAACCATTTCAACTCAGGTTCTTCATCTGAGGAATCGGTGATAATCCCGTCGAGTCCAGAGACGCCTTTACCTTTCACTGTTCGTCCAACGTGTTTCTCGCCTTCTTCATCTTCGTCCTTCGAGATCGAAGTTCAAAACCCTAACGTTCCTGTTTCGGAAGAAGAGGAAATCCTATTGAAGAAGCTGAAGAGCAACGAGGTTTTCGAACAAGAACAAGGTGTGATTTCTCTCAGGAGCATCACGAGGAGTAAAGAAGAAGCTAGGGTTTCGTTATGCACACCGCGGATTTTGTCGTCGCTGCGTTCTCTGATTGAGTCGCGTTATGTTGTGGTTCAGGTCAACGCTGTTGCTTCATTGGTCAACCTTTCGCTTGAGAAATCGAACAAGATGAGGATTGTGAGGTCGGGATTTGTTCCGTTTCTGATTGATGTGTTGAAGGGAGGATCCAGTGAGGCGCAGGAGCACGCCGCGGGTGCGATATTTAGTTTGGCTTTGGATGATGATAACAAGATGGCGATTGGAGTTCTTGGCGCGTTGCAGCCGCTTATGCACGCGATGAGGTCTGAATCGAAGCAGACTCGCCATGACTCTGCCCTTGCACTTTATCACTTGACATTGGTTCAGAGTAACAGAGTCAAGCTTGTGAAACTCGGGGTGGTCCCGACTTTGATTTCGATGGTGATGACAGGGACAATGGCTAGTCGGATTTTGTTGATTCTGTGTAATCTAGCTATGTGCGTGGAGGGAAGAACGGCCATGCTTGACGCCAATGCGGTGGAGTGTCTGGTGAGTTTGTTGAGAGGAAACGAGTTGGACTCAGAGGCGACTCGGGAGAATTGTGTTGCTGCTTTGTATGCGTTGAGTCATGGGAGCTTGAGGTTTAAAGGGTTGGCGAAGGAAGCGAAAGCTGTGGAGGTTTTAAGGGTTATTGAAGAAACCGGGACAGAGAGGGCGAGGGAGAAGGCCAAAAGGGTGTTGCAGAAGATGAGGGGTTTTGAAGATGGTGATGACGATGACGGTGAGTTTGATAGTCTTTTTGAATCGGGTGGATTGAGTCGAGCTCGTTACCGAGTTGCTGCAGCTAGGAACAACAACCTTATCAATTCAACTACATTTTAG 1599 0.4903 MGGNGKHRWKISFHRSSSSPSKSKPLQPPNEFLCPITGSLMSDPVVVSSGQTFERLSVQVCQDLKFSPLLEDGSRPDFSTIITNLAIKKTILNWCNKSHTQHPPTPDYDSIEKVVTEKIAAAAAEKEEPVRVSETELLNAVADNPPMIYSHAATEVGPRVNHFNSGSSSEESVIIPSSPETPLPFTVRPTCFSPSSSSSFEIEVQNPNVPVSEEEEILLKKLKSNEVFEQEQGVISLRSITRSKEEARVSLCTPRILSSLRSLIESRYVVVQVNAVASLVNLSLEKSNKMRIVRSGFVPFLIDVLKGGSSEAQEHAAGAIFSLALDDDNKMAIGVLGALQPLMHAMRSESKQTRHDSALALYHLTLVQSNRVKLVKLGVVPTLISMVMTGTMASRILLILCNLAMCVEGRTAMLDANAVECLVSLLRGNELDSEATRENCVAALYALSHGSLRFKGLAKEAKAVEVLRVIEETGTERAREKAKRVLQKMRGFEDGDDDDGEFDSLFESGGLSRARYRVAAARNNNLINSTTF 532
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi3g03865 532 FunFam RING-type E3 ubiquitin transferase 213 489 - -
Vivi3g03865 532 SUPERFAMILY RING/U-box 15 102 - -
Vivi3g03865 532 ProSiteProfiles U-box domain profile. 27 101 IPR003613 GO:0004842|GO:0016567
Vivi3g03865 532 Gene3D - 394 491 IPR011989 -
Vivi3g03865 532 Gene3D - 215 393 IPR011989 -
Vivi3g03865 532 PANTHER U BOX DOMAIN-CONTAINING 24 489 - -
Vivi3g03865 532 SMART Ubox_2 31 94 IPR003613 GO:0004842|GO:0016567
Vivi3g03865 532 Pfam U-box domain 29 97 IPR003613 GO:0004842|GO:0016567
Vivi3g03865 532 FunFam RING-type E3 ubiquitin transferase 9 102 - -
Vivi3g03865 532 Pfam Armadillo/beta-catenin-like repeat 326 365 IPR000225 GO:0005515
Vivi3g03865 532 SUPERFAMILY ARM repeat 217 489 IPR016024 -
Vivi3g03865 532 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 8 105 IPR013083 -
Vivi3g03865 532 SMART arm_5 285 325 IPR000225 GO:0005515
Vivi3g03865 532 SMART arm_5 326 366 IPR000225 GO:0005515
Vivi3g03865 532 SMART arm_5 244 284 IPR000225 GO:0005515
Vivi3g03865 532 SMART arm_5 406 449 IPR000225 GO:0005515
Vivi3g03865 532 MobiDBLite consensus disorder prediction 1 28 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi3g03865 Vivi-Chr3 66567115 66569298 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi3g03865 1 532 U-box Gene Family AT5G65200 57.500 0.0 570
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi3g03865 - - gmx:100784564 725.317
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi3g03865 3 66567115 66569298 Vivi3g03865 3 66567115 66569298 ECH