Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi3g03861 ATGAATTCTTTATCACTCCTTAAGGTGATATTCTGTGTTCTCATAGTAATACAATTTCTTTTTCTTGTCTACATCGTCTTGTTATCATGGCTCAAATGCCGAGGGTTCTTGTCTCACTCTTCCTCCGGCGATGCAAGTGATTTACAGTTACAGTCAACAACGGCGGCGTCGGGGTCCCGCCGCCACACACAGGGTTTAAACGAGTCTGTCATAAACATAATTCCGTCATTGATCTACTCTACTAACAATGAAGAGAAAGAATCTCAACGTGAATGTTCCGTTTGTTTGGGTGAATTTAAAGACAATGATTACATTCGTACTCTTCCTAGTTGTTCCCATACTTTCCATCTTCGTTGTATTGATACTTGGCTTCGTTTACACCCTAACTGTCCTCTTTGTCGCTCATCTCTTCGCGGCTGTGTTAGGTCAGAGTTGCCTTTCAGACCTCTCATGTCCGATAGAATCCGTCCCTCATCGGTGCAAGGGCAGTAA 492 0.4329 MNSLSLLKVIFCVLIVIQFLFLVYIVLLSWLKCRGFLSHSSSGDASDLQLQSTTAASGSRRHTQGLNESVINIIPSLIYSTNNEEKESQRECSVCLGEFKDNDYIRTLPSCSHTFHLRCIDTWLRLHPNCPLCRSSLRGCVRSELPFRPLMSDRIRPSSVQGQ 163
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi3g03861 163 PANTHER RING-H2 FINGER PROTEIN ATL16 10 141 IPR044600 GO:0016567|GO:0016740
Vivi3g03861 163 SMART ring_2 92 133 IPR001841 -
Vivi3g03861 163 FunFam E3 ubiquitin-protein ligase ATL6 54 139 - -
Vivi3g03861 163 ProSiteProfiles Zinc finger RING-type profile. 92 134 IPR001841 -
Vivi3g03861 163 SUPERFAMILY RING/U-box 81 137 - -
Vivi3g03861 163 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 52 140 IPR013083 -
Vivi3g03861 163 Pfam Ring finger domain 91 134 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi3g03861 Vivi-Chr3 66485197 66485688 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi3g03861 65 158 C3H Transcription Factor Family AT3G18930 48.113 2.23e-27 103
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi3g03861 - K19041 vvo:131658242 333.954