Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi3g03860 ATGGCAATCACAGTATCAAGTAGACAACTATTCATAGATGGAGAGTGGAGAGTTCCTATCCTCAACAAAAGGATTCCAATCATCAATCCTTCCACTGAAAACATCATAGGAGATATACCTGCTGCTACTAAGGAAGATGTTGATCTTGCTGTGGATGCTGCTAAAAGAGCCATTTCCAGAAACAAGGGTAGAGATTGGTCTACTGCTTCTGGCTCTCTTCGTGCTCGCTATCTTCGAGCCATTGCTGCAAAGATAAAAGAGAAAAAGAATGAACTAGGGAAGCTGGAATCAATTGATTGTGGAAAACCGCTGGATGAAGCACTGGGGGATCTGGATGATGTTATTGCTTGTTTTGAGTACTATGCTGGGCTTGCTGAAGAGTTGGATTCAAAGCAAAAGGCTCCTATATCTCTTCCTATGGATACCTTCAAAAGCTATATTCTCAAGGAGCCTATTGGTGTTGTTGCATTAATTACTCCATGGAACTATCCCCTCTTAATGGCAACTTGGAAAATTGCTCCGGCTCTGGCTGCTGGTTGTGCTGCAATATTGAAGCCATCTGAATTGGCATCTGTGACATGTTTGGAGTTAGGCGAAATATGCAAAGAAGTTGGCCTTCCTCCTGGTGTTTTGAATATTGTCACTGGATTAGGCCATGAAGCCGGTGCTTCTTTGGCATCCCATCCTGATGTAGATAAGATTTCATTTACGGGTAGCTCAGCAACTGGGAGCAAGATTATGACAACTGCGGCCCAGCTAGTCAAGCCTGTTTCACTAGAGCTCGGTGGAAAGAGCCCAATTGTTGTTTTCGAGGATGTTGACCTTGATAAGGTTGCTGAATGGACTGTCTTTGGCTGTTTCTTTACTAATGGCCAGATATGCAGCGCAACATCTCGACTTATTGTGCATGAAAGTATAGCTGTAGAATTTGTGAATAAACTTGTCAAATGGGCCGAAAACATCAAAATTTCGGATCCATTGGAAGAAGGTTGCAAGCTTGGACCTATTGTCAGTGAAGCACAGTATAAGAAAGTATTGAATATGATCTCAACGGCTAAGAGTGAGGGTGCAACAATTTTGACTGGTGGGCGTCGACCCGAGCATTTGAAGAAGGGATATTTTGTCAAACCAACCATCATAACCGACGTGACTACCTCAATGCAAATTTGGAGAGAAGAAGTATTTGGACCTGTACTCGCCGTAAAAACATTTAGCACCGAGGAAGAAGCTATTGATCTAGCAAATGACACTCACTATGGTTTGGGGTCTGCTGTAATGTCAAACGATTTAGAAAGATGCGAGCGTCTATCTAAGGCTCTTCAAGCTGGAGTTGTATGGATCAATTGTGCTCAGCCAAGCTTCATTCAAGCTCCATGGGGAGGCATTAAGCGTAGCGGCTTTGGCCGCGAATTAGGAGAATGGGGACTTGAGAATTACTTGAGTGTGAAGCAAGTTACTAGGTATATATCGGATGAGCCGTGGGGCTGGTATGAATCCCCTTCAAAGCTGTGA 1512 0.4365 MAITVSSRQLFIDGEWRVPILNKRIPIINPSTENIIGDIPAATKEDVDLAVDAAKRAISRNKGRDWSTASGSLRARYLRAIAAKIKEKKNELGKLESIDCGKPLDEALGDLDDVIACFEYYAGLAEELDSKQKAPISLPMDTFKSYILKEPIGVVALITPWNYPLLMATWKIAPALAAGCAAILKPSELASVTCLELGEICKEVGLPPGVLNIVTGLGHEAGASLASHPDVDKISFTGSSATGSKIMTTAAQLVKPVSLELGGKSPIVVFEDVDLDKVAEWTVFGCFFTNGQICSATSRLIVHESIAVEFVNKLVKWAENIKISDPLEEGCKLGPIVSEAQYKKVLNMISTAKSEGATILTGGRRPEHLKKGYFVKPTIITDVTTSMQIWREEVFGPVLAVKTFSTEEEAIDLANDTHYGLGSAVMSNDLERCERLSKALQAGVVWINCAQPSFIQAPWGGIKRSGFGRELGEWGLENYLSVKQVTRYISDEPWGWYESPSKL 503
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi3g03860 503 ProSitePatterns Aldehyde dehydrogenases glutamic acid active site. 259 266 IPR029510 GO:0016491
Vivi3g03860 503 Pfam Aldehyde dehydrogenase family 23 485 IPR015590 GO:0016491
Vivi3g03860 503 ProSitePatterns Aldehyde dehydrogenases cysteine active site. 287 298 IPR016160 GO:0016491
Vivi3g03860 503 CDD ALDH_F10_BADH 27 487 - -
Vivi3g03860 503 FunFam NAD/NADP-dependent betaine aldehyde dehydrogenase 12 276 - -
Vivi3g03860 503 Gene3D Aldehyde Dehydrogenase; Chain A, domain 2 267 458 IPR016163 GO:0016620
Vivi3g03860 503 Gene3D Aldehyde Dehydrogenase; Chain A, domain 1 24 483 IPR016162 GO:0016491
Vivi3g03860 503 PANTHER ALDEHYDE DEHYDROGENASE 5 502 - -
Vivi3g03860 503 SUPERFAMILY ALDH-like 6 490 IPR016161 GO:0016491
Vivi3g03860 503 FunFam Betaine aldehyde dehydrogenase 263 454 - -
Vivi3g03860 503 Coils Coil 78 98 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi3g03860 Vivi-Chr3 66438031 66441700 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi3g03860 1 501 Aldehyde Dehydrogenase Gene Family AT1G74920 75.449 0.0 824
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi3g03860 K00130 - gmx:100170755 897.116
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi3g03860 3 66438031 66441700 Vivi3g03860 3 66438031 66441700 ECH
Vivi1g02081 1 44059817 44064503 Vivi3g03860 3 66438031 66441700 PCT