Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi3g03859 ATGGGAATCACAGAAGAGAGAGTAGTGGCAGTTATCATGGTCGGAGGCCCCACCAAAGGCACACGATTCCGTCCATTATCATTCAACATTCCCAAACCACTCTTCCCATTAGCTGGACAACCCATGGTTCATCACCCTATCTCTGCTTGTCGAAAAATTCCCAATCTGGCTAGGATTTATCTCATTGGTTTCTATGAAGAACGCGAGTTCGCATTATACGTATCGTCCATCTCCAATGAACTTAAAATCCCGGTTAGATACTTGAAAGAGGATAAGCCTCATGGCTCTGCTGGTGGCCTTTATAACTTTAAAGATCTCATCATGGAAGAAGATCCGTCGCATATTTTCTTGCTCAATTGTGATGTTTGCTGCAGTTTTCCACTCCCACAAATGCTAGATGCTCACAAAAAACATGGTGGCATGGGAACAATACTGGTTGTTAAGGTTTCTCCGGAGTCAGCTAGCGAATTTGGGGAATTAGTTGCTGATCCGGTCACACATGAACTCTTGCATTACACGGAGAAACCTGAAACTTTTGTTAGTGACCTTATAAACTGCGGTGTGTATATATTTACACCAGATATCTTTACTGCCATTGAGGGTGTTTCTTCTAATTGGAAAGACAGAGCTAACTTAAGGCGTGTCTCCAGTTTTGAAGCAATGGTGCCAGACACGAGGAATCATACAGCAAATTATGTCAGATTGGATCAAGATATCCTCTCACCTCTTGCAGGGAAGAAACAGTTGTATATACATGAAACTTTGGACTTCTGGGAACAAATCAAAACTCCTGGAATGTCCATAAGATGTTCGGCCTTGTATCTTTCACAATTTCGTCACACGGCGCCCCATCTATTAGCAAATGGAGATGGTATTAAGAAAGCCTACATCAGTGGTGATGTTTATATTCATCCATCAGCAAAAGTGAATCCGTCTGCAAAGATTGGTCCTGGTGTATCAATATCGGCAAATGCTCGTATAGGAGCTGGTGCAAGGCTCATAAATTGTATAGTCCTTGATGATGTCGAAATCAAGGAAAATGCTGTTGTTCTTCATGCAATTGTTGGATGGAAATCCACCATTGGACGATGGGCACGTGTCCAGGGTGGTGGAGATTACAATGCAAAACTCGGAGTTACTATACTTGGTGAATCTGTTGATGTTGAGGATGAGGTGGTGGTTATTAATAGCATTGTCCTTCCAAACAAGACCTTAAATGTTGGCGTGCAAGATGAGATTATATTATAG 1248 0.4215 MGITEERVVAVIMVGGPTKGTRFRPLSFNIPKPLFPLAGQPMVHHPISACRKIPNLARIYLIGFYEEREFALYVSSISNELKIPVRYLKEDKPHGSAGGLYNFKDLIMEEDPSHIFLLNCDVCCSFPLPQMLDAHKKHGGMGTILVVKVSPESASEFGELVADPVTHELLHYTEKPETFVSDLINCGVYIFTPDIFTAIEGVSSNWKDRANLRRVSSFEAMVPDTRNHTANYVRLDQDILSPLAGKKQLYIHETLDFWEQIKTPGMSIRCSALYLSQFRHTAPHLLANGDGIKKAYISGDVYIHPSAKVNPSAKIGPGVSISANARIGAGARLINCIVLDDVEIKENAVVLHAIVGWKSTIGRWARVQGGGDYNAKLGVTILGESVDVEDEVVVINSIVLPNKTLNVGVQDEIIL 415
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi3g03859 415 FunFam Putative GDP-mannose pyrophosphorylase 284 412 - -
Vivi3g03859 415 SUPERFAMILY Nucleotide-diphospho-sugar transferases 9 357 IPR029044 -
Vivi3g03859 415 CDD M1P_guanylylT_A_like_N 10 274 - -
Vivi3g03859 415 FunFam Mannose-1-phosphate guanyltransferase alpha 7 278 - -
Vivi3g03859 415 Pfam Nucleotidyl transferase 10 226 IPR005835 GO:0009058
Vivi3g03859 415 PANTHER SUGAR-1-PHOSPHATE GUANYL TRANSFERASE 9 415 - -
Vivi3g03859 415 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 3 279 IPR029044 -
Vivi3g03859 415 Gene3D Hexapeptide repeat proteins 283 412 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi3g03859 Vivi-Chr3 66416487 66431321 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi3g03859 4 350 Eukaryotic Initiation Factors Gene Family AT2G34970 22.807 1.74e-07 51.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi3g03859 K00966 - gmx:100817201 731.095
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi3g03859 3 66416487 66431321 Vivi3g03859 3 66416487 66431321 ECH