Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi3g03858 ATGGGAATCACAGAAGAGAGAGTAGTGGCAGTTATCATGGTCGGAGGCCCCACCAAAGGCACACGATTCCGTCCATTATCATTCAACATTCCCAAACCACTCTTCCCATTAGCTGGACAACCCATGGTTCATCACCCTATCTCTGCTTGTCGAAAAATTCCCAATCTGGCTAGGATTTATCTCATTGGTTTCTATGAAGAACGCGAGTTCGCATTATACGTATCGTCCATCTCCAATGAACTTAAAATCCCGGTTAGATACTTGAAAGAGGATAAGCCTCATGGCTCTGCTGGTGGCCTTTATAACTTTAAAGATCTCATCATGGAAGAAGATCCGTCGCATATTTTCTTGCTCAATTGTGATGTTTGCTGCAGTTTTCCACTCCCACAAATGCTAGATGCTCACAAAAAACATGGTGGCATGGGAACAATACTGGTTGTTAAGGTTTCTCCGGAGTCAGCTAGCGAATTTGGGGAATTAGTTGCTGATCCGGTCACACATGAACTCTTGCATTACACGGAGAAACCTGAAACTTTTGTTAGTGACCTTATAAACTGCGGTGTGTATATATTTACACCAGATATCTTTACTGCCATTGAGGGTGTTTCTTCTAATTGGAAAGACAGAGCTAACTTAAGGCGTGTCTCCAGTTTTGAAGCAATGGTGCCAGACACGAGGAATCATACAGCAAATTATGTCAGATTGGATCAAGATATCCTCTCACCTCTTGCAGGGAAGAAACAGTTGTATATACATGAAACTTTGGACTTCTGGGAACAAATCAAAACTCCTGGAATGTCCATAAGATGTTCGGCCTTGTATCTTTCACAATTTCGTCACACGGCGCCCCATCTATTAGCAAATGGAGATGGTATTAAGAAAGCCTACATCAGTGGTGATGTTTATATTCATCCATCAGCAAAAGTGAATCCGTCTGCAAAGATTGGTCCTGGTGTATCAATATCGGCAAATGCTCGTATAGGAGCTGGTGCAAGGCTCATAAATTGTATAGTCCTTGATGATGTCGAAATCAAGGAAAATGCTGTTGTTCTTCATGCAATTGTTGGATGGAAATCCACCATTGGACGATGGGCACGTGTCCAGGTGAATCTGTTGATGTTGAGGATGAGGTGGTGGTTATTAATAGCATTGTCCTTCCAAACAAGACCTTAA 1173 0.4237 MGITEERVVAVIMVGGPTKGTRFRPLSFNIPKPLFPLAGQPMVHHPISACRKIPNLARIYLIGFYEEREFALYVSSISNELKIPVRYLKEDKPHGSAGGLYNFKDLIMEEDPSHIFLLNCDVCCSFPLPQMLDAHKKHGGMGTILVVKVSPESASEFGELVADPVTHELLHYTEKPETFVSDLINCGVYIFTPDIFTAIEGVSSNWKDRANLRRVSSFEAMVPDTRNHTANYVRLDQDILSPLAGKKQLYIHETLDFWEQIKTPGMSIRCSALYLSQFRHTAPHLLANGDGIKKAYISGDVYIHPSAKVNPSAKIGPGVSISANARIGAGARLINCIVLDDVEIKENAVVLHAIVGWKSTIGRWARVQVNLLMLRMRWWLLIALSFQTRP 390
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi3g03858 390 SUPERFAMILY Nucleotide-diphospho-sugar transferases 9 357 IPR029044 -
Vivi3g03858 390 CDD M1P_guanylylT_A_like_N 10 274 - -
Vivi3g03858 390 FunFam Mannose-1-phosphate guanyltransferase alpha 7 278 - -
Vivi3g03858 390 Pfam Nucleotidyl transferase 10 226 IPR005835 GO:0009058
Vivi3g03858 390 PANTHER SUGAR-1-PHOSPHATE GUANYL TRANSFERASE 9 372 - -
Vivi3g03858 390 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 3 279 IPR029044 -
Vivi3g03858 390 Gene3D Hexapeptide repeat proteins 286 366 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi3g03858 Vivi-Chr3 66416480 66431326 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi3g03858 7 350 Eukaryotic Initiation Factors Gene Family AT2G34970 22.980 2.09e-07 51.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi3g03858 K00966 - gmx:100817201 657.907