Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi3g03849 ATGGCTATCTCCGGCGATGTTCTCAGAGACTGTTTACCGGAAGTTGTTGGTGACTTTCACGTTCTTGCTGTTGATGATAGTTTTGTGGATCGTAAGGTTATTGAAAGGTTGCTCAAATTCACTTCTTGCAAAGTGACTGTTGTTGAGAGCGGAACTAGAGCTCTACAGTATCTAGGGTTGGATGGTGATACGAGTTCAATTGGTTTTGATGGTGTGAAGGTTAATATGATAATGACTGATTATTCCATGCCTGGGATGACAGGATATGAACTTCTCAAGAAGATTAAGGAATCATCTGTTTTTAGAGAGATTCCAGTGGTGGTTATGTCCTCTGAGAACATCTTGACCCGAATCGATAGTTGTTTGGAGGAAGGAGCCGAAGAGTTTCTATTGAAACCTGTCAAGTTGTCCGATGTGAAACGGTTAACAGATTTCATCCTGAGAGGTGAAGGTAAGAAAGTGGAAGGAAAAAGATCTCAAAAAAGAAGCCGGTCAGATGATTCCATTTCATCTCTATCGTCCTCATGTTCATCATGTGATCTATCATCAGTGTCACCGTCTGAAATATCGTCCAAGAAATCTAGACTATAA 591 0.4078 MAISGDVLRDCLPEVVGDFHVLAVDDSFVDRKVIERLLKFTSCKVTVVESGTRALQYLGLDGDTSSIGFDGVKVNMIMTDYSMPGMTGYELLKKIKESSVFREIPVVVMSSENILTRIDSCLEEGAEEFLLKPVKLSDVKRLTDFILRGEGKKVEGKRSQKRSRSDDSISSLSSSCSSCDLSSVSPSEISSKKSRL 196
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi3g03849 196 PANTHER TWO-COMPONENT RESPONSE REGULATOR 19 174 IPR045279 GO:0009736
Vivi3g03849 196 MobiDBLite consensus disorder prediction 166 196 - -
Vivi3g03849 196 Gene3D - 20 183 - -
Vivi3g03849 196 Pfam Response regulator receiver domain 21 140 IPR001789 GO:0000160
Vivi3g03849 196 SUPERFAMILY CheY-like 18 148 IPR011006 -
Vivi3g03849 196 SMART REC_2 19 143 IPR001789 GO:0000160
Vivi3g03849 196 MobiDBLite consensus disorder prediction 152 196 - -
Vivi3g03849 196 CDD REC_typeA_ARR 21 142 - -
Vivi3g03849 196 ProSiteProfiles Response regulatory domain profile. 20 147 IPR001789 GO:0000160
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi3g03849 Vivi-Chr3 66156463 66158686 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi3g03849 19 172 Response Regulator Gene Family AT3G48100 69.032 2.28e-74 220
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Vivi3g03849 Response_reg 3.6e-19 CL0304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi3g03849 K14492 - gmx:100306152 254.218
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi3g03849 3 66156463 66158686 Vivi3g03849 3 66156463 66158686 ECH