Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi3g03848 ATGGCTATCTCCGGCGATGTTCTCAGAGACTGTTTACCGGAAGTTGTTGGTGACTTTCACGTTCTTGCTGTTGATGATAGTTTTGTGGATCGTAAGGTTATTGAAAGGTTGCTCAAATTCACTTCTTGCAAAGTGACTGTTGTTGAGAGCGGAACTAGAGCTCTACAGTATCTAGGGTTGGATGGTGATACGAGTTCAATTGGTTTTGATGGTGTGAAGGTTAATATGATAATGACTGATTATTCCATGCCTGGGATGACAGGATATGAACTTCTCAAGAAGATTAAGCAGGAATCATCTGTTTTTAGAGAGATTCCAGTGGTGGTTATGTCCTCTGAGAACATCTTGACCCGAATCGATAGTTGTTTGGAGGAAGGAGCCGAAGAGTTTCTATTGAAACCTGTCAAGTTGTCCGATGTGAAACGGTTAACAGATTTCATCCTGAGAGGTGAAGGTAAGAAAGTGGAAGGAAAAAGATCTCAAAAAAGAAGCCGGTCAGATGATTCCATTTCATCTCTATCGTCCTCATGTTCATCATGTGATCTATCATCAGTGTCACCGTCTGAAATATCGTCCAAGAAATCTAGACTATAA 594 0.4091 MAISGDVLRDCLPEVVGDFHVLAVDDSFVDRKVIERLLKFTSCKVTVVESGTRALQYLGLDGDTSSIGFDGVKVNMIMTDYSMPGMTGYELLKKIKQESSVFREIPVVVMSSENILTRIDSCLEEGAEEFLLKPVKLSDVKRLTDFILRGEGKKVEGKRSQKRSRSDDSISSLSSSCSSCDLSSVSPSEISSKKSRL 197
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi3g03848 197 MobiDBLite consensus disorder prediction 153 197 - -
Vivi3g03848 197 PANTHER TWO-COMPONENT RESPONSE REGULATOR 19 175 IPR045279 GO:0009736
Vivi3g03848 197 ProSiteProfiles Response regulatory domain profile. 20 148 IPR001789 GO:0000160
Vivi3g03848 197 SMART REC_2 19 144 IPR001789 GO:0000160
Vivi3g03848 197 Pfam Response regulator receiver domain 21 141 IPR001789 GO:0000160
Vivi3g03848 197 CDD REC_typeA_ARR 21 143 - -
Vivi3g03848 197 MobiDBLite consensus disorder prediction 167 197 - -
Vivi3g03848 197 Gene3D - 20 184 - -
Vivi3g03848 197 SUPERFAMILY CheY-like 18 149 IPR011006 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi3g03848 Vivi-Chr3 66156463 66158704 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi3g03848 19 173 Response Regulator Gene Family AT3G48100 68.590 1.32e-72 216
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Vivi3g03848 Response_reg 2.9e-19 CL0304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi3g03848 K14492 - gmx:100306152 249.595