Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi3g03844 ATGGATTCTGCAGACGGAAATGGAAATGGAAATGGGCAGGAGGAGTCTTTGCCTCCTCCACCTCCTGTTGTCCCTTCAGATGTGGTGCCTCTCAAAGCAGAGGAGGTGCTCTCAGCCCCTCCTGAACCTGTTAAGAAGAAAATTACCCGTCTTCCAATTGCAAGACGAGGTCTTGGAACAAAAGGAATGAAGATACCCCTTTTAACTAATCACTTTAATGTTAACATTGGTAAAAATGATGGATATTTTTTTCAGTACAGTGTGAACTTTACTTATGAAGATGGACGCCCTGTGGAAGGTAAGGGTGTTGGTAGGAAGATAATGGACCGTGTGCAGGAGACATATGCTTCTGACTTGAATGGCAAGGAATTTGCATACGACGGGGAGAAAAGTCTGTTTACTATTGGCTCTCTTCCTCAAAACAAGCTCGAGTTTGAGATTGTTTTAGAGGAGGCTAGATCTAACAGAAATAATGGTAATCTTAGTCCTGATGGTAATGGAGACAATGAGAGTGACAAAAAGAGGATCCGACGCCCCTACAATGCCAAGGCATTTAAAGTTGAAATTAGCTTTGCTACCAAAGTTCCTATGTATGCCATTGCCAATGCGTTACGTGGGCAGGAAACGGAGAATTTCCAAGAAGCTGTTAGAGTTCTTGATATCATATTGAGGCAACATGCTGCTAAGCAGGGCTGCCTACTTGTTCGTCAAAACTTTTTTCATAATGATCCCAAGAGTTTTGCTGATGTCGGGGGTGGTGTTCTAGGCTGTAGAGGATTCCATTCAAGTTTTAGAGCTACGCAGAGCGGTCTCTCCCTTAACATAGATGTCACAACCACCATGATAATTCAACCTGGGCCTGTGGTGGATTTCTTAATTTCTAATCAAAATGCAAGAGATCCTTTTAATCTTGACTGGGCAAAGGCTAAAAGGACTCTAAAAAATCTGAGGGTCAAAACTCATCCATCCAATCAAGAGGGAAAAATTTGTGGACTCAGTGACGTCCCATGCAAAGAGCTTATCTTTACTTTGAAGAAAAGGGATGGCAGCGAAGGTACTGAAGAAATGACTGTTTTGGATTATTTTGTTAATGTCCGAAAGATAGATCTGCGCTACTCTGCCGATTTACCATGCATTAATATTGGCAGGCCTAAACGACCAACATATTTACCCATTGAGCTGTGTGAATTGGTGTCGTTGCAACGATATACAAAAGCTTTGTCCACACTTCAAAGGGCTTCATTAGTAGAGAAGTCCAGACAGAAGCCACAAGAGAGGATGCGAATTTTATCAGATGCACTTAAAACCAGCAACTATGGTGCTGAACCTCTGCTTCAAAGCTGTGGAGTTACTATAAGCACAGGCTTTACTCAAGTGGAAGGACGTGTTTTGCCTGCTCCAAGGTTGAAATTTGGCAATGGTGAAGATTTCAATCCAAGAAATGGAAGGTGGAATTTTAACAATAAGAAATTTGTGCAGCCAACAAAGATCGATAAATGGGCTGTGGCAAACTTTTCTGCACGATGTGATGTACGGGGACTTATAAGGGATCTAATTAGAATTGGAAATACGAAAGGAATTGTGATTGCTGAACCATTTGATGTGTTTGAAGAAAATCCTCAGTTTAGACGTGCCCCACCAATGGTTAGAGTGGAGAAGATGTTTGAGATCATTCAGTCTAAACTTCCTGGGGCTCCTCAATTCCTTCTCTGTTTGCTTCCTGATCGAAAAAACTGTGATATTTATGGTCCATGGAAAAAGAAGAATCTTGCTGATTATGGAATCGTCAATCAGTGCATGTGTCCTGTAAGAGTCAATGATCAGTATCTGGGTAATATTATGTTGAAGATCAATGCCAAGCTTGGTGGGTTGAACTCATTGCTGGGTGTTGAAAGTTCTCCGTCTCTTCCTATTGTTTCCAAAGCTCCTACTCTCATTCTAGGAATGGATGTGTCACACGGCTCACCAGGGCAGACTGATATTCCTTCAATTGCTGCTGTTGTCAGTTCTAGACAGTGGCCTCTGATTTCCAAATATAGGGCATGTGTTCGCACACAATCTGCAAAAGTTGAAATGATAGATAATTTGTTCAAGAAAGTATCAGATACTGAAGATGAGGGCATCATAAGGGAACTCTTGCTCGATTTCTATAATAGTTCTGGGAAGAGAAAACCAGATAACATTATTATTTTTAGGGATGGTGTTAGCGAGTCACAATTCAATCAAGTCTTGAACATTGAACTTGACCAGATCATTGAGGCATGCAAGTTTCTTGATGAAAAATGGAATCCAAAATTTGCGGTAATTGTTGCTCAAAAGAACCACCACACAAGATTCTTCCAGCCCAACGCACCCGAAAATGTCCCACCAGGTACTGTTATTGACAATAAAATTTGTCACCCCAGAAACTATGATTTCTATCTCTGTGCTCATGCGGGAATGATAGGCACAAGTAGGCCTACTCATTATCATGTGTTGCTTGATGAGATTGGCTTCTCCCCTGACGAACTTCAGGAGCTTGTTCATTCTCTTTCATATGTTTACCAGAGGAGTACTACTGCTATTTCAGTTGTTGCACCTATATGCTATGCACACTTGGCTGCAACTCAATTGGGTCAGTTCATGAAATTTGAGGATAAATCTGAGACAGCCTCAAGCCATGGTGGGCTAAGTGCTGCAGGAGCTGTACCTGTCCCTCAGCTTCCGAAATTGCAGGACAGTGTGTGCAACTCTATGTTCTTCTGTTGA 2748 0.4185 MDSADGNGNGNGQEESLPPPPPVVPSDVVPLKAEEVLSAPPEPVKKKITRLPIARRGLGTKGMKIPLLTNHFNVNIGKNDGYFFQYSVNFTYEDGRPVEGKGVGRKIMDRVQETYASDLNGKEFAYDGEKSLFTIGSLPQNKLEFEIVLEEARSNRNNGNLSPDGNGDNESDKKRIRRPYNAKAFKVEISFATKVPMYAIANALRGQETENFQEAVRVLDIILRQHAAKQGCLLVRQNFFHNDPKSFADVGGGVLGCRGFHSSFRATQSGLSLNIDVTTTMIIQPGPVVDFLISNQNARDPFNLDWAKAKRTLKNLRVKTHPSNQEGKICGLSDVPCKELIFTLKKRDGSEGTEEMTVLDYFVNVRKIDLRYSADLPCINIGRPKRPTYLPIELCELVSLQRYTKALSTLQRASLVEKSRQKPQERMRILSDALKTSNYGAEPLLQSCGVTISTGFTQVEGRVLPAPRLKFGNGEDFNPRNGRWNFNNKKFVQPTKIDKWAVANFSARCDVRGLIRDLIRIGNTKGIVIAEPFDVFEENPQFRRAPPMVRVEKMFEIIQSKLPGAPQFLLCLLPDRKNCDIYGPWKKKNLADYGIVNQCMCPVRVNDQYLGNIMLKINAKLGGLNSLLGVESSPSLPIVSKAPTLILGMDVSHGSPGQTDIPSIAAVVSSRQWPLISKYRACVRTQSAKVEMIDNLFKKVSDTEDEGIIRELLLDFYNSSGKRKPDNIIIFRDGVSESQFNQVLNIELDQIIEACKFLDEKWNPKFAVIVAQKNHHTRFFQPNAPENVPPGTVIDNKICHPRNYDFYLCAHAGMIGTSRPTHYHVLLDEIGFSPDELQELVHSLSYVYQRSTTAISVVAPICYAHLAATQLGQFMKFEDKSETASSHGGLSAAGAVPVPQLPKLQDSVCNSMFFC 915
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi3g03844 915 Gene3D paz domain 279 403 - -
Vivi3g03844 915 Pfam Mid domain of argonaute 478 531 IPR032473 -
Vivi3g03844 915 FunFam Protein argonaute 7 280 403 - -
Vivi3g03844 915 Gene3D - 635 915 IPR036397 GO:0003676
Vivi3g03844 915 MobiDBLite consensus disorder prediction 1 27 - -
Vivi3g03844 915 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 2C 45 878 - -
Vivi3g03844 915 FunFam Protein argonaute 3 636 915 - -
Vivi3g03844 915 CDD PAZ_argonaute_like 285 398 - -
Vivi3g03844 915 SMART Piwi_a_2 568 876 IPR003165 GO:0003676
Vivi3g03844 915 ProSiteProfiles Piwi domain profile. 568 876 IPR003165 GO:0003676
Vivi3g03844 915 Pfam Argonaute linker 1 domain 235 283 IPR014811 -
Vivi3g03844 915 SUPERFAMILY PAZ domain 280 439 IPR036085 GO:0005515
Vivi3g03844 915 MobiDBLite consensus disorder prediction 156 175 - -
Vivi3g03844 915 SMART DUF1785_2 233 285 IPR014811 -
Vivi3g03844 915 Pfam PAZ domain 289 415 IPR003100 GO:0005515
Vivi3g03844 915 Pfam Piwi domain 569 876 IPR003165 GO:0003676
Vivi3g03844 915 ProSiteProfiles PAZ domain profile. 328 399 IPR003100 GO:0005515
Vivi3g03844 915 Pfam Argonaute linker 2 domain 425 471 IPR032472 -
Vivi3g03844 915 SUPERFAMILY Ribonuclease H-like 552 874 IPR012337 -
Vivi3g03844 915 Pfam N-terminal domain of argonaute 64 223 IPR032474 -
Vivi3g03844 915 Gene3D - 463 629 - -
Vivi3g03844 915 CDD Piwi_ago-like 443 870 IPR045246 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi3g03844 Vivi-Chr3 66092644 66099274 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi3g03844 55 915 Eukaryotic Initiation Factors Gene Family AT5G43810 35.714 2.70e-167 512
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi3g03844 K11593 - gmx:100820376 1591.25