Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi3g03841 ATGAAGAAGGTTTTTCTTTATGCTTGTTTACTACTCAACTTGAGTTTTTTGGTTATTTTTCCATATAGCAAAGCTACTCAAGCTGATAAACTTGATGAGTTGATTCTCTCCAGAAGCTCACATAATCCTCCTAAGACTTTCACTTGGGAAGCTGAAGATGCATTGCAAACACAGTCTTCTTCTTCTGCTTATGATGTGCCTCCTCAAGAGGGGAAAAGACTAGCTGATAAGATTGTCACATTGCCTGGTCAACCCTATGGAGTGAACTTTGATCAATACTCAGGCTATGTCACAGTTGATCATGAGGCTGGAAGAGAACTTTTCTACTATTTTGTGGAGTCTCCATATAAATCTTCAACTAAACCTTTAATATTGTGGCTCAATGGAGGACCTGGTTGTTCCTCACTTGGTTATGGAGCCTTTGAGGAGCTTGGACCCTTCAGAATCAACTCTGATGGCAAAACTCTATACCGTAACCCTTATGCTTGGAATGAAGTTGCAAATATACTTTTCTTGGAATCTCCGGCCGGAGTAGGTTTTTCCTACTCAAACACTACTTCTGACTATGACAATTCAGGAGATAAGACAACTGCAAAGGATGCTTATGTCTTCCTTATCAACTGGCTGGAGAGGTTTCCACAGTACAAAACCCGAGATTTTTACATAACTGGAGAGAGTTATGCTGGTCATTATGTTCCTCAACTTGCATCTACTATTCTTCAAAACAATAAACTCTATAATCAAATCATTATTAACCTCAAAGGCATTTCTATTGGGAATGCTTGGATTGATGATGCTACAAGTTTAAAAGGGATATTTGATTACCTTTGGACTCATGCTTTGATTTCAGATCAAACTCATGAGTTGATTGACAAGTACTGTGACTTCACTTCTAATGGTTCAGCAATATGTACCAATGCAGCAATAAGAGCTTCCAATGAGACCGGAAACATAGATTTCTATAACATCTATGCTCCACAATGTCACAATTCTTCTCTCAAAAATGGCTCAACTGGTTATGTAAGTAATAAATTTGACCCTTGTTCTGATCACTATGGTATTGCCTATTTCAATAGGCCAGAGGTCCAAAAGGCTCTTCATGCAAAACCTACAAATTGGAGCCATTGCAGTCGTGTTATTCGGACCTGGAAAGACAGTCCAGTTACAATCCTTCCCACCATCAAGTACCTCATCGACAGTGGCATTAAATTATGGATATACAGTGGTGATACTGATTCAGTGGTTCCAGTTACATCTTCAAGATATTCAATCAACTCTCTCAAGCTTCCTATCAACTCCGCTTGGCGTCCATGGTATTCTGGAAAAGAGATTGGAGGATATGTGGTGGGATACAAAGGATTGACATTTGTTACAGTAAGAGGAGCTGGACATCTTGTTCCAAGCTGGCAACCTGAGCGAGCTTTGACTTTGATCTCATCGTTCGTCTATGGAATCCTGCCTCCTGTTTCACCATCAAATTAA 1482 0.3968 MKKVFLYACLLLNLSFLVIFPYSKATQADKLDELILSRSSHNPPKTFTWEAEDALQTQSSSSAYDVPPQEGKRLADKIVTLPGQPYGVNFDQYSGYVTVDHEAGRELFYYFVESPYKSSTKPLILWLNGGPGCSSLGYGAFEELGPFRINSDGKTLYRNPYAWNEVANILFLESPAGVGFSYSNTTSDYDNSGDKTTAKDAYVFLINWLERFPQYKTRDFYITGESYAGHYVPQLASTILQNNKLYNQIIINLKGISIGNAWIDDATSLKGIFDYLWTHALISDQTHELIDKYCDFTSNGSAICTNAAIRASNETGNIDFYNIYAPQCHNSSLKNGSTGYVSNKFDPCSDHYGIAYFNRPEVQKALHAKPTNWSHCSRVIRTWKDSPVTILPTIKYLIDSGIKLWIYSGDTDSVVPVTSSRYSINSLKLPINSAWRPWYSGKEIGGYVVGYKGLTFVTVRGAGHLVPSWQPERALTLISSFVYGILPPVSPSN 493
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi3g03841 493 Gene3D alpha/beta hydrolase 73 330 IPR029058 -
Vivi3g03841 493 FunFam Carboxypeptidase 72 330 - -
Vivi3g03841 493 ProSitePatterns Serine carboxypeptidases, serine active site. 222 229 IPR018202 GO:0004185
Vivi3g03841 493 PANTHER SERINE PROTEASE FAMILY S10 SERINE CARBOXYPEPTIDASE 78 471 IPR001563 GO:0004185|GO:0006508
Vivi3g03841 493 ProSitePatterns Serine carboxypeptidases, histidine active site. 454 471 IPR033124 GO:0004185
Vivi3g03841 493 PRINTS Carboxypeptidase C serine protease (S10) family signature 159 171 IPR001563 GO:0004185|GO:0006508
Vivi3g03841 493 PRINTS Carboxypeptidase C serine protease (S10) family signature 454 467 IPR001563 GO:0004185|GO:0006508
Vivi3g03841 493 PRINTS Carboxypeptidase C serine protease (S10) family signature 208 233 IPR001563 GO:0004185|GO:0006508
Vivi3g03841 493 PRINTS Carboxypeptidase C serine protease (S10) family signature 172 182 IPR001563 GO:0004185|GO:0006508
Vivi3g03841 493 FunFam Carboxypeptidase 390 484 - -
Vivi3g03841 493 Gene3D - 390 484 - -
Vivi3g03841 493 SUPERFAMILY alpha/beta-Hydrolases 78 485 IPR029058 -
Vivi3g03841 493 Pfam Serine carboxypeptidase 82 482 IPR001563 GO:0004185|GO:0006508
Vivi3g03841 493 Gene3D - 348 382 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi3g03841 Vivi-Chr3 66055097 66057179 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi3g03841 345 484 Calmodulin-binding Proteins AT2G22960 29.530 1.31e-11 61.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi3g03841 K16297 - mtr:11443022 846.654