Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi3g03826 ATGGAACACAATCATAAACTAGCAACAACAAGTGAAGCAGGAGAAGGACAACCTATAAGATGTAAAGCTGCGGTTGCAAGAAAACCAGGTGAGCCATTGGTTATAGAAGAGATCATTGTTGCCCCACCAATGCCTCATGAAGTTCGGATTCGTATTCTATGTACTTCTCTCTGTCACAGTGATTTCACTTTTTGGAAGATGCAGGAATCTCCTGGCATTTTCCCAAGAATTCTAGGTCATGAGGCAGCTGGGATTGTGGAAAGTGTAGGAAAGGATGTAACTGAAGTTACAAAAGGAGATGTTGTTATTCCAATTTTCCTACCAGATTGTGGAGAGTGTAGAGATTGCAAATCAACCAAGAGCAACCTCTGTACTAATTTCCCTTTCAAGGTGTCTCCATGGATGCCAAGACATGGGAGCACTAGATTCACCGACCTAAACGGAGAGATCATATATCATTTCATGTTTGTTTCAAGTTTCAGCGAGTACACTGTGGTTGACATCGCCAATGTAACAAAAATTGATCCACAAATCCCTCCTGACCGGGCATGTCTTCTCAGTTGTGGCATTTCTACAGGGGTAGGTGCTGCTTGGAGAACTGCAGGTGTGGAGCCAGGGTCTACAGTCGCTATTTTTGGGCTGGGATCTGTTGGATTAGCAGTTGCAGAGGGAGCTAGACTTTGTGGAGCAACTAGGATTATTGGTGTTGATGTCATCCCTGAAAAATTTGAAATCGGAAAGAAGTTTGGACTTACAGATTTTATCCATGCTGCAGAAAGTGGGAACAAACCTGTGAGCCAGGTTATCCAAGAGATGACCGACGGAGGAGCAGATTATTGCTTCGAATGTGTTGGTATGGCATCATTGGTGCATGAAGCTTATGCTTCCTGCAGAAAGGGTTGGGGTAAAACAATTGTTGTAGGAGTGGACAAACCAGGAGCTAGGTTGAGTTTCAGTTCTAGTGAGGTTCTTCATGATGGGAAGAGCCTCATGGGATCCTTGTATGGAGGACTCAAACCCAAATCTCATGTTCCGATTCTGTTGAAGCGTTACATGGACAAGGAACTGCAGTTGGATGAATTTGTGACTCATGAAGTGGAGTTTAAGGACATAAACAAAGCTTTTGATTTGTTGAGCAAAGGACAGTGTCTTCGATGTGTGATTTGGATGGAAACATGA 1179 0.4351 MEHNHKLATTSEAGEGQPIRCKAAVARKPGEPLVIEEIIVAPPMPHEVRIRILCTSLCHSDFTFWKMQESPGIFPRILGHEAAGIVESVGKDVTEVTKGDVVIPIFLPDCGECRDCKSTKSNLCTNFPFKVSPWMPRHGSTRFTDLNGEIIYHFMFVSSFSEYTVVDIANVTKIDPQIPPDRACLLSCGISTGVGAAWRTAGVEPGSTVAIFGLGSVGLAVAEGARLCGATRIIGVDVIPEKFEIGKKFGLTDFIHAAESGNKPVSQVIQEMTDGGADYCFECVGMASLVHEAYASCRKGWGKTIVVGVDKPGARLSFSSSEVLHDGKSLMGSLYGGLKPKSHVPILLKRYMDKELQLDEFVTHEVEFKDINKAFDLLSKGQCLRCVIWMET 392
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi3g03826 392 FunFam Alcohol dehydrogenase 6 24 204 - -
Vivi3g03826 392 SUPERFAMILY GroES-like 15 199 IPR011032 -
Vivi3g03826 392 SUPERFAMILY GroES-like 341 389 IPR011032 -
Vivi3g03826 392 Pfam Zinc-binding dehydrogenase 217 337 IPR013149 -
Vivi3g03826 392 Pfam Alcohol dehydrogenase GroES-like domain 45 173 IPR013154 -
Vivi3g03826 392 Gene3D - 193 333 - -
Vivi3g03826 392 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 178 353 IPR036291 -
Vivi3g03826 392 FunFam S-(hydroxymethyl)glutathione dehydrogenase 193 333 - -
Vivi3g03826 392 Gene3D - 24 385 - -
Vivi3g03826 392 ProSitePatterns Zinc-containing alcohol dehydrogenases signature. 79 93 IPR002328 GO:0008270|GO:0016491
Vivi3g03826 392 PANTHER ALCOHOL DEHYDROGENASE 16 388 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi3g03826 Vivi-Chr3 65673048 65676126 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi3g03826 47 214 Monolignol Biosynthesis Gene Families AT4G37970 27.811 1.62e-10 59.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi3g03826 K00121 - gmx:100817521 680.248