Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi3g03825 ATGGAACATAAACCTCCAATTGAAGGAGAAGGCCAACCTATAAGATGTAAAGCGGCGGTTGTAAGAAGGCCTGGTGAGCCATTGGTGATTGAAGAGATCATCGTGGCGCCACCGATGGCTCGTGAGGTCCGGATTCGTGTTCTGTGTTCATCTATCTGCCATATTGATCTCGCTTTTTCCAACATGAAGGACCCTCCTGGCTTTTTCCCGAGAATTCTTGGTCATGAGGCAGCTGGGGTTGTCGAAAGTGTAGGGAAGGATGTAACTGAAGTTGCAAAAGGAGATGTTGTTATTCCAATTTTCCTACCAGATTGTGGAGAGTGTATAGATTGCAAATCAACCAAGAGCAACCTTTGTACTAATTTCCCTTTCAAGGTGTCTCCATGGATGCTTAGACACGGTACTTCTAGATTCACCGATTCAAATGGAGAAATCATATATCATTTCATGAATGTTTCAAGTTTTAGCGAGTACACTGTGGTTGACATTGCCAATGTAACAAAGATTGACAAAGAAGTTCCTCCAGAAAGGGTGTGCCTTCTTAGTTGTGGTATAGGAGCAGGAGTAGGTGCTCCTTGGAGAACTGCAGGTGTGGAGCCAGGGTCTACGGTAGCTATTTTTGGTATGGGATCTATTGGACTAGCGGTTGCTGAGGGAGCTAGAGTTTGTGGAGCAACTAAGATTATAGGTGTAGATGTCAACCCAGAAAAATTTGAAGTCGGTAAAAAGTTTGGGCTCACAGACTTTATCCATGCTCGAGAATGTACGAACAAATCTGTGAGCCAGGTCATCATAGAGATGACGGACGGGGGAGCGGATTATTGCTTTGAATGTGTTGGAATGGCGTCATTGGTGCATGAAGCATATGCTTCTTGCAGAAAGGGTTGGGGAAAAACAATTGTCTTAGGATTGGATAAACCTGAATCCAAGTTGAGCCTCAGTTCTAGTGAGGTCCTTCATGATGGGAAGACCCTTAAGGGAAACTTGTTTGGAGGACTCAAACCTAAGTCTCATGTTTCCATTCTTCTCCAGCGATACATGGACAAGGAACTGCAGTTGGATGAATTTGTCACTCATGAAGTGCAGTTTAAGGACATAAACAAAGCTTTTGATTTATTGAGAAATGGAGAATGTCTTCGATGCGTGATTTGGATGGACAAATGA 1164 0.4364 MEHKPPIEGEGQPIRCKAAVVRRPGEPLVIEEIIVAPPMAREVRIRVLCSSICHIDLAFSNMKDPPGFFPRILGHEAAGVVESVGKDVTEVAKGDVVIPIFLPDCGECIDCKSTKSNLCTNFPFKVSPWMLRHGTSRFTDSNGEIIYHFMNVSSFSEYTVVDIANVTKIDKEVPPERVCLLSCGIGAGVGAPWRTAGVEPGSTVAIFGMGSIGLAVAEGARVCGATKIIGVDVNPEKFEVGKKFGLTDFIHARECTNKSVSQVIIEMTDGGADYCFECVGMASLVHEAYASCRKGWGKTIVLGLDKPESKLSLSSSEVLHDGKTLKGNLFGGLKPKSHVSILLQRYMDKELQLDEFVTHEVQFKDINKAFDLLRNGECLRCVIWMDK 387
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi3g03825 387 FunFam S-(hydroxymethyl)glutathione dehydrogenase 188 328 - -
Vivi3g03825 387 Gene3D - 19 380 - -
Vivi3g03825 387 Pfam Zinc-binding dehydrogenase 212 332 IPR013149 -
Vivi3g03825 387 Gene3D - 188 328 - -
Vivi3g03825 387 Pfam Alcohol dehydrogenase GroES-like domain 41 168 IPR013154 -
Vivi3g03825 387 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 173 348 IPR036291 -
Vivi3g03825 387 SUPERFAMILY GroES-like 10 189 IPR011032 -
Vivi3g03825 387 PANTHER ALCOHOL DEHYDROGENASE 11 383 - -
Vivi3g03825 387 SUPERFAMILY GroES-like 337 384 IPR011032 -
Vivi3g03825 387 FunFam Alcohol dehydrogenase 6 19 198 - -
Vivi3g03825 387 ProSitePatterns Zinc-containing alcohol dehydrogenases signature. 74 88 IPR002328 GO:0008270|GO:0016491
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi3g03825 Vivi-Chr3 65667371 65671317 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi3g03825 42 373 Monolignol Biosynthesis Gene Families AT2G21730 24.571 8.30e-12 64.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi3g03825 K00121 - gmx:100817521 642.114
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi3g03825 3 65667371 65671317 Vivi7g03045 7 95204418 95206964 PCT