Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi3g03820 ATGTCAAATCGAGGTGGAAGGGATCGGGATCGGTCTAGGAGGGACTATCCTTCAAGATATGAAGACAATAAGGGGAATGGTGGTTCGGGGCGCGGTGGTAGCAGCAGTAATAGTGGTGGTAATCCTCCTTCCAGGCACCTTTGGGTTGGGAATCTACCTCACAATATTGTAGAAGATGAACTTGCTCATCCTTTCATACGGTTTGGACCGCTGGAAAAAGTTGCGTTTCAGCCCGGGAGAAGCTATGCTTTCATCAATTTCGAAGTGGATGAAGATGCCATTGATGCCATGAGATCGCTGCAGGGTTTTCCTCTTGCTGGCAACCCGCTTAGAATCGAGTTTGCAAAGGCGGACAAGCCCTCGGCAGTAACACGTGATGAAGATTATTCTCGTGATGAACGCAGACCAGCGATAAGGGGGTCTCCTTTCCCCCAACGAGAGTTTAGAGGACGTCATGGTAGCCCTGAACCACATTATTCTGACAAATCCAAATTGAGTGATAAAAATCCAGAGCCCAGTGAGGTTTTGTGGATTGGGTTCCCAGCTCAGTTAAAGGTGGATGAATCAATTTTGGATAGGGCTTTTTCTCCATTTGGTGAGATTGTGAAGATTTCAACATTTCCAGGTCGTAGTTATGCGTTTGTTCGCTATAGAAATCAGACTTCAGCATGCAGAGCAATAGATGCTCTGAAGGGAAAATTATTTGGGAATCCCCGCGTACATATTTGTTTTGCCAAGAGTGAATCAGGTTCATCAAGCAGTGGGAAGAGCTCATTTAATGGCCCTCGATCCCCATCATACAAGTCAAGTGGCCGTGGTGGATCTTCTGAGAACTTTAGGCAGGATTGGAGCTTTGGTGGGGAGCAGAACATTAGTTCTCCGAATATGATAGGGAATTGGGATTCTCGAGATTCTGATTTTAACAACAGGGGTTCTTCATGGGCTGGTGGAGCTCACGCATATGAGCCAAGGAAAGTTGGAGAGAAGGGCGCTCCACTAGGAGTATCACAAGAATTCTATGAACATAAAAATAGTCCATCAAGAGAAAGACACTTTCTTCAGGGTGATTTTCCACAGAATTATCCTCAAAGAGGTCCATTTTTTGAAGATCCGCATGGCTTGTCTGAAGATGCACCTTATCTTCATGTGGCTAAAAAGCTAAAGAGTGGTTCTTCTCCTTCTGACAGAGAGCTTCCAGAGTATGCTTTTTCTGAACTAGAAAGACAAAAACATGTTTTCCCTAGACCATTACCTGATTTTCCTCATCGCGAAGCTTTTGACAAAAGCTTTGATGCTGGAAACTTCAATTATGGACAAACATTTAATCACCCACCAAGTTCGCCTCTGGTTCGCATGGATAGACATGATGGCTGGAAACCTTATGATAATTTCCAAATGGGTCCTGGTGCTCTCCAATCAAATTTTATTGAGAAAAAAAGATTTACACCTGAACCTGATAATTCATCTTCATCTGAGTGGAAATGGGAAGGAACCATTGCTAAAGGTGGGACCCCTATTTGTCGTGCCCGCTGCTTTCCTGTAGGGAAAGTCCTTGATATCGCATTACCTGAATTCTTGGACTGCACTGCAAGAACTAGTCTAGACATGCTTTCGAAACATTACTATCAAGCAGTTGGTGTTTGGGTTGTTTTCTTTGTGCCAGGAAGTGATGCTGACATTGAATTCTACAATGAGTTTATGCATTATCTGGAGGAAAAGCAGCGAGCTGCTGTTTCCAAAGTGGATGACAAGACTACCTTATTTCTCGTACCTCCATCAGAGTTCTCAGAGAAAGTGTTAAAGGTACCTGGTAAATTGAGTATATCTGGTGTTATTCTTAGGTTGGAATATCCTGGTTTAAACCAAGGTTCTATGCACATTGAAAGAGAAATGAAAAACGAAAACCTCTCGTCTTATAATGAGAACATGTATCCAAATTCATCTTTTCCATCCGCATGCATGCCTACAAACCCACCATCTATTTCAGAATTGGGTAATTCTGGAATCAGAAGCAACCTTTCATTTCTTGGAAACAAATTTCCAGCAGCTCCATTAGTATCAAATTCAGCCTATTCTGAAGCTGGCATGTCTGAGTCCTATGATGGAAGAAATCATGACTATCCATCCATCCAGCCACGGCCATCGGGACCAAACTGGCCTCCTCCCAATCCGCATAATTTCAACTCTAACAGAGCTTTACCTTCAAATCCATTCAGCGGTGCTGTTGAACCTATTGCCGAGGAGCGTCACCCCATCATGAATGTAAATACAACTCAACATACCAGTGGAAATTCTGGTATTCCATTTGGTGGTAACAGCATTTCATCGCATCAGGAAATGAGAAATTTCGATCCTTCAACCCCTGTGGGATCCCTGCAACCAGAACAACTGGCACAACTAGCTGCAACTCTTCTTGAGCAGCAGAGGCATTTGGGAAGCTCTATGAGCACATCTGCAGTAAGTGATCCCAGACAGAACAGATTTAATGAGTCTGAAGCCTCATCCAGACCATCATATGCTGCAGAAAATAACCTAGCGAACTCTGAGTTCTCGACATCTCAGTTTGGTCATCACGGTCTACAGTTGCAAAAGCAACAGCAGCAACAACAACAACAACAGCAAATGATGCCAAATGCGCCACAGTTCTCACAGGCTCAAAGAGAATTACCAAGAGAAGTTAATGGAAATCAGCAGTTGGCAGATCATGGGTTGCAGGAAGACGGAGACGCAGATCCACAGAGACGTTTACAAGCAACACTAAAGCTGGCTGCTACTCTACTTCAGCAAATCCATCAAGAAAAAGGGAATTGA 2811 0.4379 MSNRGGRDRDRSRRDYPSRYEDNKGNGGSGRGGSSSNSGGNPPSRHLWVGNLPHNIVEDELAHPFIRFGPLEKVAFQPGRSYAFINFEVDEDAIDAMRSLQGFPLAGNPLRIEFAKADKPSAVTRDEDYSRDERRPAIRGSPFPQREFRGRHGSPEPHYSDKSKLSDKNPEPSEVLWIGFPAQLKVDESILDRAFSPFGEIVKISTFPGRSYAFVRYRNQTSACRAIDALKGKLFGNPRVHICFAKSESGSSSSGKSSFNGPRSPSYKSSGRGGSSENFRQDWSFGGEQNISSPNMIGNWDSRDSDFNNRGSSWAGGAHAYEPRKVGEKGAPLGVSQEFYEHKNSPSRERHFLQGDFPQNYPQRGPFFEDPHGLSEDAPYLHVAKKLKSGSSPSDRELPEYAFSELERQKHVFPRPLPDFPHREAFDKSFDAGNFNYGQTFNHPPSSPLVRMDRHDGWKPYDNFQMGPGALQSNFIEKKRFTPEPDNSSSSEWKWEGTIAKGGTPICRARCFPVGKVLDIALPEFLDCTARTSLDMLSKHYYQAVGVWVVFFVPGSDADIEFYNEFMHYLEEKQRAAVSKVDDKTTLFLVPPSEFSEKVLKVPGKLSISGVILRLEYPGLNQGSMHIEREMKNENLSSYNENMYPNSSFPSACMPTNPPSISELGNSGIRSNLSFLGNKFPAAPLVSNSAYSEAGMSESYDGRNHDYPSIQPRPSGPNWPPPNPHNFNSNRALPSNPFSGAVEPIAEERHPIMNVNTTQHTSGNSGIPFGGNSISSHQEMRNFDPSTPVGSLQPEQLAQLAATLLEQQRHLGSSMSTSAVSDPRQNRFNESEASSRPSYAAENNLANSEFSTSQFGHHGLQLQKQQQQQQQQQQMMPNAPQFSQAQRELPREVNGNQQLADHGLQEDGDADPQRRLQATLKLAATLLQQIHQEKGN 936
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi3g03820 936 MobiDBLite consensus disorder prediction 1 47 - -
Vivi3g03820 936 Gene3D - 160 256 IPR012677 -
Vivi3g03820 936 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 174 247 IPR000504 GO:0003723
Vivi3g03820 936 MobiDBLite consensus disorder prediction 855 916 - -
Vivi3g03820 936 MobiDBLite consensus disorder prediction 695 732 - -
Vivi3g03820 936 SUPERFAMILY RNA-binding domain, RBD 185 275 IPR035979 GO:0003676
Vivi3g03820 936 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 186 239 IPR000504 GO:0003723
Vivi3g03820 936 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 47 110 IPR000504 GO:0003723
Vivi3g03820 936 Pfam SPOC domain 488 603 IPR012921 -
Vivi3g03820 936 MobiDBLite consensus disorder prediction 810 841 - -
Vivi3g03820 936 CDD SPOC_FPA-like 494 613 - -
Vivi3g03820 936 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 45 117 IPR000504 GO:0003723
Vivi3g03820 936 MobiDBLite consensus disorder prediction 756 791 - -
Vivi3g03820 936 PANTHER RNA RECOGNITION MOTIF-CONTAINING 24 930 - -
Vivi3g03820 936 MobiDBLite consensus disorder prediction 121 169 - -
Vivi3g03820 936 CDD RRM_SF 185 242 - -
Vivi3g03820 936 MobiDBLite consensus disorder prediction 1 21 - -
Vivi3g03820 936 MobiDBLite consensus disorder prediction 121 170 - -
Vivi3g03820 936 Gene3D - 33 134 IPR012677 -
Vivi3g03820 936 MobiDBLite consensus disorder prediction 855 901 - -
Vivi3g03820 936 SUPERFAMILY RNA-binding domain, RBD 31 123 IPR035979 GO:0003676
Vivi3g03820 936 MobiDBLite consensus disorder prediction 28 44 - -
Vivi3g03820 936 FunFam RNA recognition motif (RRM)-containing protein 160 253 - -
Vivi3g03820 936 SMART rrm1_1 175 243 IPR000504 GO:0003723
Vivi3g03820 936 SMART rrm1_1 46 113 IPR000504 GO:0003723
Vivi3g03820 936 MobiDBLite consensus disorder prediction 247 288 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi3g03820 Vivi-Chr3 65578886 65589354 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi3g03820 36 269 Eukaryotic Initiation Factors Gene Family AT1G71770 24.797 1.90e-10 62.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi3g03820 - - vvo:131661720 1791.55