Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Vivi3g03820 | ATGTCAAATCGAGGTGGAAGGGATCGGGATCGGTCTAGGAGGGACTATCCTTCAAGATATGAAGACAATAAGGGGAATGGTGGTTCGGGGCGCGGTGGTAGCAGCAGTAATAGTGGTGGTAATCCTCCTTCCAGGCACCTTTGGGTTGGGAATCTACCTCACAATATTGTAGAAGATGAACTTGCTCATCCTTTCATACGGTTTGGACCGCTGGAAAAAGTTGCGTTTCAGCCCGGGAGAAGCTATGCTTTCATCAATTTCGAAGTGGATGAAGATGCCATTGATGCCATGAGATCGCTGCAGGGTTTTCCTCTTGCTGGCAACCCGCTTAGAATCGAGTTTGCAAAGGCGGACAAGCCCTCGGCAGTAACACGTGATGAAGATTATTCTCGTGATGAACGCAGACCAGCGATAAGGGGGTCTCCTTTCCCCCAACGAGAGTTTAGAGGACGTCATGGTAGCCCTGAACCACATTATTCTGACAAATCCAAATTGAGTGATAAAAATCCAGAGCCCAGTGAGGTTTTGTGGATTGGGTTCCCAGCTCAGTTAAAGGTGGATGAATCAATTTTGGATAGGGCTTTTTCTCCATTTGGTGAGATTGTGAAGATTTCAACATTTCCAGGTCGTAGTTATGCGTTTGTTCGCTATAGAAATCAGACTTCAGCATGCAGAGCAATAGATGCTCTGAAGGGAAAATTATTTGGGAATCCCCGCGTACATATTTGTTTTGCCAAGAGTGAATCAGGTTCATCAAGCAGTGGGAAGAGCTCATTTAATGGCCCTCGATCCCCATCATACAAGTCAAGTGGCCGTGGTGGATCTTCTGAGAACTTTAGGCAGGATTGGAGCTTTGGTGGGGAGCAGAACATTAGTTCTCCGAATATGATAGGGAATTGGGATTCTCGAGATTCTGATTTTAACAACAGGGGTTCTTCATGGGCTGGTGGAGCTCACGCATATGAGCCAAGGAAAGTTGGAGAGAAGGGCGCTCCACTAGGAGTATCACAAGAATTCTATGAACATAAAAATAGTCCATCAAGAGAAAGACACTTTCTTCAGGGTGATTTTCCACAGAATTATCCTCAAAGAGGTCCATTTTTTGAAGATCCGCATGGCTTGTCTGAAGATGCACCTTATCTTCATGTGGCTAAAAAGCTAAAGAGTGGTTCTTCTCCTTCTGACAGAGAGCTTCCAGAGTATGCTTTTTCTGAACTAGAAAGACAAAAACATGTTTTCCCTAGACCATTACCTGATTTTCCTCATCGCGAAGCTTTTGACAAAAGCTTTGATGCTGGAAACTTCAATTATGGACAAACATTTAATCACCCACCAAGTTCGCCTCTGGTTCGCATGGATAGACATGATGGCTGGAAACCTTATGATAATTTCCAAATGGGTCCTGGTGCTCTCCAATCAAATTTTATTGAGAAAAAAAGATTTACACCTGAACCTGATAATTCATCTTCATCTGAGTGGAAATGGGAAGGAACCATTGCTAAAGGTGGGACCCCTATTTGTCGTGCCCGCTGCTTTCCTGTAGGGAAAGTCCTTGATATCGCATTACCTGAATTCTTGGACTGCACTGCAAGAACTAGTCTAGACATGCTTTCGAAACATTACTATCAAGCAGTTGGTGTTTGGGTTGTTTTCTTTGTGCCAGGAAGTGATGCTGACATTGAATTCTACAATGAGTTTATGCATTATCTGGAGGAAAAGCAGCGAGCTGCTGTTTCCAAAGTGGATGACAAGACTACCTTATTTCTCGTACCTCCATCAGAGTTCTCAGAGAAAGTGTTAAAGGTACCTGGTAAATTGAGTATATCTGGTGTTATTCTTAGGTTGGAATATCCTGGTTTAAACCAAGGTTCTATGCACATTGAAAGAGAAATGAAAAACGAAAACCTCTCGTCTTATAATGAGAACATGTATCCAAATTCATCTTTTCCATCCGCATGCATGCCTACAAACCCACCATCTATTTCAGAATTGGGTAATTCTGGAATCAGAAGCAACCTTTCATTTCTTGGAAACAAATTTCCAGCAGCTCCATTAGTATCAAATTCAGCCTATTCTGAAGCTGGCATGTCTGAGTCCTATGATGGAAGAAATCATGACTATCCATCCATCCAGCCACGGCCATCGGGACCAAACTGGCCTCCTCCCAATCCGCATAATTTCAACTCTAACAGAGCTTTACCTTCAAATCCATTCAGCGGTGCTGTTGAACCTATTGCCGAGGAGCGTCACCCCATCATGAATGTAAATACAACTCAACATACCAGTGGAAATTCTGGTATTCCATTTGGTGGTAACAGCATTTCATCGCATCAGGAAATGAGAAATTTCGATCCTTCAACCCCTGTGGGATCCCTGCAACCAGAACAACTGGCACAACTAGCTGCAACTCTTCTTGAGCAGCAGAGGCATTTGGGAAGCTCTATGAGCACATCTGCAGTAAGTGATCCCAGACAGAACAGATTTAATGAGTCTGAAGCCTCATCCAGACCATCATATGCTGCAGAAAATAACCTAGCGAACTCTGAGTTCTCGACATCTCAGTTTGGTCATCACGGTCTACAGTTGCAAAAGCAACAGCAGCAACAACAACAACAACAGCAAATGATGCCAAATGCGCCACAGTTCTCACAGGCTCAAAGAGAATTACCAAGAGAAGTTAATGGAAATCAGCAGTTGGCAGATCATGGGTTGCAGGAAGACGGAGACGCAGATCCACAGAGACGTTTACAAGCAACACTAAAGCTGGCTGCTACTCTACTTCAGCAAATCCATCAAGAAAAAGGGAATTGA | 2811 | 0.4379 | MSNRGGRDRDRSRRDYPSRYEDNKGNGGSGRGGSSSNSGGNPPSRHLWVGNLPHNIVEDELAHPFIRFGPLEKVAFQPGRSYAFINFEVDEDAIDAMRSLQGFPLAGNPLRIEFAKADKPSAVTRDEDYSRDERRPAIRGSPFPQREFRGRHGSPEPHYSDKSKLSDKNPEPSEVLWIGFPAQLKVDESILDRAFSPFGEIVKISTFPGRSYAFVRYRNQTSACRAIDALKGKLFGNPRVHICFAKSESGSSSSGKSSFNGPRSPSYKSSGRGGSSENFRQDWSFGGEQNISSPNMIGNWDSRDSDFNNRGSSWAGGAHAYEPRKVGEKGAPLGVSQEFYEHKNSPSRERHFLQGDFPQNYPQRGPFFEDPHGLSEDAPYLHVAKKLKSGSSPSDRELPEYAFSELERQKHVFPRPLPDFPHREAFDKSFDAGNFNYGQTFNHPPSSPLVRMDRHDGWKPYDNFQMGPGALQSNFIEKKRFTPEPDNSSSSEWKWEGTIAKGGTPICRARCFPVGKVLDIALPEFLDCTARTSLDMLSKHYYQAVGVWVVFFVPGSDADIEFYNEFMHYLEEKQRAAVSKVDDKTTLFLVPPSEFSEKVLKVPGKLSISGVILRLEYPGLNQGSMHIEREMKNENLSSYNENMYPNSSFPSACMPTNPPSISELGNSGIRSNLSFLGNKFPAAPLVSNSAYSEAGMSESYDGRNHDYPSIQPRPSGPNWPPPNPHNFNSNRALPSNPFSGAVEPIAEERHPIMNVNTTQHTSGNSGIPFGGNSISSHQEMRNFDPSTPVGSLQPEQLAQLAATLLEQQRHLGSSMSTSAVSDPRQNRFNESEASSRPSYAAENNLANSEFSTSQFGHHGLQLQKQQQQQQQQQQMMPNAPQFSQAQRELPREVNGNQQLADHGLQEDGDADPQRRLQATLKLAATLLQQIHQEKGN | 936 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Vivi3g03820 | 936 | MobiDBLite | consensus disorder prediction | 1 | 47 | - | - | |
Vivi3g03820 | 936 | Gene3D | - | 160 | 256 | IPR012677 | - | |
Vivi3g03820 | 936 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 174 | 247 | IPR000504 | GO:0003723 | |
Vivi3g03820 | 936 | MobiDBLite | consensus disorder prediction | 855 | 916 | - | - | |
Vivi3g03820 | 936 | MobiDBLite | consensus disorder prediction | 695 | 732 | - | - | |
Vivi3g03820 | 936 | SUPERFAMILY | RNA-binding domain, RBD | 185 | 275 | IPR035979 | GO:0003676 | |
Vivi3g03820 | 936 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 186 | 239 | IPR000504 | GO:0003723 | |
Vivi3g03820 | 936 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 47 | 110 | IPR000504 | GO:0003723 | |
Vivi3g03820 | 936 | Pfam | SPOC domain | 488 | 603 | IPR012921 | - | |
Vivi3g03820 | 936 | MobiDBLite | consensus disorder prediction | 810 | 841 | - | - | |
Vivi3g03820 | 936 | CDD | SPOC_FPA-like | 494 | 613 | - | - | |
Vivi3g03820 | 936 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 45 | 117 | IPR000504 | GO:0003723 | |
Vivi3g03820 | 936 | MobiDBLite | consensus disorder prediction | 756 | 791 | - | - | |
Vivi3g03820 | 936 | PANTHER | RNA RECOGNITION MOTIF-CONTAINING | 24 | 930 | - | - | |
Vivi3g03820 | 936 | MobiDBLite | consensus disorder prediction | 121 | 169 | - | - | |
Vivi3g03820 | 936 | CDD | RRM_SF | 185 | 242 | - | - | |
Vivi3g03820 | 936 | MobiDBLite | consensus disorder prediction | 1 | 21 | - | - | |
Vivi3g03820 | 936 | MobiDBLite | consensus disorder prediction | 121 | 170 | - | - | |
Vivi3g03820 | 936 | Gene3D | - | 33 | 134 | IPR012677 | - | |
Vivi3g03820 | 936 | MobiDBLite | consensus disorder prediction | 855 | 901 | - | - | |
Vivi3g03820 | 936 | SUPERFAMILY | RNA-binding domain, RBD | 31 | 123 | IPR035979 | GO:0003676 | |
Vivi3g03820 | 936 | MobiDBLite | consensus disorder prediction | 28 | 44 | - | - | |
Vivi3g03820 | 936 | FunFam | RNA recognition motif (RRM)-containing protein | 160 | 253 | - | - | |
Vivi3g03820 | 936 | SMART | rrm1_1 | 175 | 243 | IPR000504 | GO:0003723 | |
Vivi3g03820 | 936 | SMART | rrm1_1 | 46 | 113 | IPR000504 | GO:0003723 | |
Vivi3g03820 | 936 | MobiDBLite | consensus disorder prediction | 247 | 288 | - | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Vivi3g03820 | Vivi-Chr3 | 65578886 | 65589354 | Dispersed |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Vivi3g03820 | 36 | 269 | Eukaryotic Initiation Factors Gene Family | AT1G71770 | 24.797 | 1.90e-10 | 62.8 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Vivi3g03820 | - | - | vvo:131661720 | 1791.55 |