Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi3g03801 ATGATATATAGAAACCAAGTTGAGAGCAAGATGAAGAAGGTTTCTCTTTATGCTTGTTTATTACTCAACTTGACTCTTTTCGCTATTGTTCCATATAGCAAGGCTAGTCAAGCTGATAAACTTGATGAGTTGATTCTGTCTAGAAGCTCCCAGAATCCTCCGAAGACTCTTTCATGGGAAGAAGAAGATACAGTGAAAACACAGTCTTCTTCATCTGCTTATGTTGTACCTCCTCAAGAGGAGCAAAGACTAGCTGACAAGATTGTCACATTGCCTGGTCAACCCAATGGAGTTAATTTTGACCAATACTCAGGCTATGTCACAGTTGATCATGAGGCTGGAAGAGAACTTTTCTACTATTTTGTGGAATCTCCATATAACTCATCAACTAACCCTTTAGTATTGTGGCTCAATGGAGGACCTGGTTGTTCCTCACTCGGATATGGAGCCTTTGAGGAGCTAGGACCCTTCAGAATCAACTCTAATGGAAAAACTCTATACCGGAACCCATATGCTTGGAATGAAGTTGCAAATGTACTTTTCTTGGAATCTCCAGCAGGAGTAGGCTTTTCCTACTCAAACACAACTTCTGACTACGACAAATCAGGAGATAAGACAACTGCCAAGGATGCTTATGTCTTCCTTATCAACTGGTTGGAGAGATTTCCGCAATACAAAACAAGAGATTTTTACATAACTGGAGAGAGTTATGCTGGTCACTATGTTCCTCAACTTGCATCCACTATTCTTCACAACAATAAACTCTTTAATCAAACCATTATCAACCTTAAAGGAATTTCAATAGGGAATGCTTGGGTTGATGATGCTACAGGTTCAAAGGGGTTATATGACTACTTTTGGACTCATGCTTTAAATTCAGATCAAACTCATGAGTTGATTGACAAGTACTGTGACTTCACTTCTCAAAATGATTCAGCAATATGTGCCAATGCAACCGCAAAGGCCTTAATTGAAAAAGGAAAGATAGATTTCTATAACATCTATGCTCCACAGTGTCATGATTCTTCTCTCAAAAATGGTTCAACTGGTTATGTAAGTAATGATTTTGACCCTTGTTCTGATTACTATGGTATTGCCTATCTAAATACACCAGAGGTTCAAAAGGCTCTTCATGCAAAACCTACAAATTGGAGTCATTGCGGTGATCTTATTACTAAATGGAATGACAGTCCAATCACCATCCTACCCACCATCAAGTATTTGATCGATAGCGGCATTAGATTATGGATATACAGTGGCGATACAGATGCAAGAGTTCCGGTCACAACTTCAAGATACGCAATCAATACTTTTAAACTTCCTATCAACTCCGCTTGGCGTCCATGGTACTCCGGAAAAGAGATTGGAGGATATGTGGTGGGGTACAAAGGATTAACATTTGTTACAGTAAGAGGAGCAGGTCATCTTGTTCCAAGCTGGCAGCCGGCACGAGCTTTGACATTGATCTCGTCATTCATCTATGGAATTCTACCTCCTGTTTCACCATCAAATTAG 1515 0.3974 MIYRNQVESKMKKVSLYACLLLNLTLFAIVPYSKASQADKLDELILSRSSQNPPKTLSWEEEDTVKTQSSSSAYVVPPQEEQRLADKIVTLPGQPNGVNFDQYSGYVTVDHEAGRELFYYFVESPYNSSTNPLVLWLNGGPGCSSLGYGAFEELGPFRINSNGKTLYRNPYAWNEVANVLFLESPAGVGFSYSNTTSDYDKSGDKTTAKDAYVFLINWLERFPQYKTRDFYITGESYAGHYVPQLASTILHNNKLFNQTIINLKGISIGNAWVDDATGSKGLYDYFWTHALNSDQTHELIDKYCDFTSQNDSAICANATAKALIEKGKIDFYNIYAPQCHDSSLKNGSTGYVSNDFDPCSDYYGIAYLNTPEVQKALHAKPTNWSHCGDLITKWNDSPITILPTIKYLIDSGIRLWIYSGDTDARVPVTTSRYAINTFKLPINSAWRPWYSGKEIGGYVVGYKGLTFVTVRGAGHLVPSWQPARALTLISSFIYGILPPVSPSN 504
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi3g03801 504 PANTHER SERINE PROTEASE FAMILY S10 SERINE CARBOXYPEPTIDASE 88 482 IPR001563 GO:0004185|GO:0006508
Vivi3g03801 504 FunFam Carboxypeptidase 358 496 - -
Vivi3g03801 504 Gene3D - 401 495 - -
Vivi3g03801 504 Gene3D alpha/beta hydrolase 83 341 IPR029058 -
Vivi3g03801 504 FunFam Carboxypeptidase 401 495 - -
Vivi3g03801 504 ProSitePatterns Serine carboxypeptidases, serine active site. 232 239 IPR018202 GO:0004185
Vivi3g03801 504 ProSitePatterns Serine carboxypeptidases, histidine active site. 465 482 IPR033124 GO:0004185
Vivi3g03801 504 Pfam Serine carboxypeptidase 92 494 IPR001563 GO:0004185|GO:0006508
Vivi3g03801 504 PRINTS Carboxypeptidase C serine protease (S10) family signature 465 478 IPR001563 GO:0004185|GO:0006508
Vivi3g03801 504 PRINTS Carboxypeptidase C serine protease (S10) family signature 169 181 IPR001563 GO:0004185|GO:0006508
Vivi3g03801 504 PRINTS Carboxypeptidase C serine protease (S10) family signature 218 243 IPR001563 GO:0004185|GO:0006508
Vivi3g03801 504 PRINTS Carboxypeptidase C serine protease (S10) family signature 182 192 IPR001563 GO:0004185|GO:0006508
Vivi3g03801 504 SUPERFAMILY alpha/beta-Hydrolases 86 497 IPR029058 -
Vivi3g03801 504 MobiDBLite consensus disorder prediction 52 73 - -
Vivi3g03801 504 Gene3D - 359 392 - -
Vivi3g03801 504 FunFam Carboxypeptidase 82 341 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi3g03801 Vivi-Chr3 65109763 65112068 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi3g03801 356 495 Calmodulin-binding Proteins AT2G22960 30.822 4.45e-13 65.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi3g03801 K16297 - mtr:11443022 905.975