Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi3g03800 ATGAAGAAGGTTTCTCTTTATGCTTGTTTATTACTCAACTTTAGTCTTTTGGCTATTGTTCCATATAGCAAAGCTACTCAAGCTGATAAACTTGATGAGTTGATTCTGTCCAGAAGCTCACAGAATCCTCCTAAGACTTTTTCATGGGAAGCTGAAGATGCATTGAAAACACAGTCTTCTTCTGCTTATGTTGTACCTCCTCAAGAGGGCAAAATACTAGCTGATAAGATTGTCACATTGCCTGGTCAACCCTATGGAGTTGATTTTGACCAATACTCAGGCTATGTCACAGTTGATCATGAGACTGAGAGAGAACTTTTCTATTATTTTGTTGAGTCTCCACATAACTCTTCCACCAAACCTCTAATATTGTGGCTCAGTGGAGGACCTGGTTGTTCCTCACTGGGGTATGGAGCCTTTGAGGAGCTAGGACCCTTCAGAGTCAACTCTGATGGAAAAACTCTCCACCGTAACCCATATGCTTGGAACGAAGTTGCAAATATACTTTTCTTGGAATCTCCAGCAGGAGTAGGCTTTTCCTACTCGAACACGACTTCTGACTACAACAATTCAGGAGATAAGACAGCTGCAAAGGATGCATATGTCTTCCTAATCAACTGGTTGGAGAGATTTCCAGAGTACAAAACAAGAGATTTTTACCTAACTGGAGAGAGTTATGCTGGTCACTTTGCTCCTCAGCTTGCATCCACTATTCTTCACAATAATAAACTCTATAACCAATTCATTATTAACCTCAAAGGCATTTCTATAGGAAATCCTTGGATTAATGATGCTACAGATTTAAAAGGGATATTCGATTTCTTTTGGACTCATGCTTTGAACTCAGATCAAACTCATGAGTTGATTGACAAGTACTGTGACTTCAACTCTGAAAATGAATCAGCAATATGTTACAATGCAACAATAAGAGCTTCAAATGAGATAGGGCACATAGATTTCTATAACATCTATGCTCCACAATGTCACGATTCTTCTCTCAAAAATGTCTCAACTGGTTATGTAAGTAATGAGTTTGACCCTTGTTCTGATTACTATGGTGTTGCCTATCTAAATAGACCAGAGGTTCAAAAGGCTCTTCATGCAATACCTACTAATTGGACCTTTTGCACCCGTGTCATTCGTAACTGGATAGACAGTCCAGTTACCGTCCTTCCCACCATCAAGTATCTCATCGACAGTGGCATTAAAGTATGGATATACAGTGGTGATACAGATGCAAGGGTTCCAGTTACATCTTCAAGATATTCCATCAACACTCTTAAGCTTCCTGTCAACTATCCTTGGCGTCCATGGTACTCCGGAAAAGAGATTGGAGGATATGTTGTGGGATACAAAGGATTGACATTTGTCACAGTAAGAGGATCCGGACATCTTGTTCCAAGCTGGCAGCCGGAACGAGCTTTGACTTTGATCTCATCATTCATCTATGGAATCCTGCCTCCTGTCTCACCATCAAATTAA 1482 0.4028 MKKVSLYACLLLNFSLLAIVPYSKATQADKLDELILSRSSQNPPKTFSWEAEDALKTQSSSAYVVPPQEGKILADKIVTLPGQPYGVDFDQYSGYVTVDHETERELFYYFVESPHNSSTKPLILWLSGGPGCSSLGYGAFEELGPFRVNSDGKTLHRNPYAWNEVANILFLESPAGVGFSYSNTTSDYNNSGDKTAAKDAYVFLINWLERFPEYKTRDFYLTGESYAGHFAPQLASTILHNNKLYNQFIINLKGISIGNPWINDATDLKGIFDFFWTHALNSDQTHELIDKYCDFNSENESAICYNATIRASNEIGHIDFYNIYAPQCHDSSLKNVSTGYVSNEFDPCSDYYGVAYLNRPEVQKALHAIPTNWTFCTRVIRNWIDSPVTVLPTIKYLIDSGIKVWIYSGDTDARVPVTSSRYSINTLKLPVNYPWRPWYSGKEIGGYVVGYKGLTFVTVRGSGHLVPSWQPERALTLISSFIYGILPPVSPSN 493
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Vivi3g03800 493 ProSitePatterns Serine carboxypeptidases, serine active site. 221 228 IPR018202 GO:0004185
Vivi3g03800 493 PRINTS Carboxypeptidase C serine protease (S10) family signature 171 181 IPR001563 GO:0004185|GO:0006508
Vivi3g03800 493 PRINTS Carboxypeptidase C serine protease (S10) family signature 454 467 IPR001563 GO:0004185|GO:0006508
Vivi3g03800 493 PRINTS Carboxypeptidase C serine protease (S10) family signature 207 232 IPR001563 GO:0004185|GO:0006508
Vivi3g03800 493 PRINTS Carboxypeptidase C serine protease (S10) family signature 158 170 IPR001563 GO:0004185|GO:0006508
Vivi3g03800 493 Gene3D alpha/beta hydrolase 72 330 IPR029058 -
Vivi3g03800 493 ProSitePatterns Serine carboxypeptidases, histidine active site. 454 471 IPR033124 GO:0004185
Vivi3g03800 493 FunFam Carboxypeptidase 390 484 - -
Vivi3g03800 493 Pfam Serine carboxypeptidase 81 483 IPR001563 GO:0004185|GO:0006508
Vivi3g03800 493 FunFam Carboxypeptidase 71 330 - -
Vivi3g03800 493 PANTHER SERINE PROTEASE FAMILY S10 SERINE CARBOXYPEPTIDASE 77 471 IPR001563 GO:0004185|GO:0006508
Vivi3g03800 493 Gene3D - 390 484 - -
Vivi3g03800 493 SUPERFAMILY alpha/beta-Hydrolases 77 485 IPR029058 -
Vivi3g03800 493 Gene3D - 348 381 - -
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Vivi3g03800 Vivi-Chr3 65101219 65103309 Tandem
       

Functional genes information


Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi3g03800 345 484 Calmodulin-binding Proteins AT2G22960 28.082 1.04e-10 59.3
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi3g03800 K16297 - mtr:11443022 817.764