Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi3g03761 ATGGAACAAAACCCATATAACAAAATCAAACCTTTTTCAATTATGCTTCATTATGTAGGTGTGGAAGAGAGGAATGAAACAAAGGGTTATAGTGAAGAATTTCAAGCAATGTTGAATAGATTGGAACAAGAAGATAGCTATGAAGATGGTAACATAATGTTGGAGAAGAAAAGAAGACTTGGTTATGATCAAGTGAAAGCTTTGGAAAAGAGTTTTGAGTTGGACAACAAGTTAGAGCCAGAGAGAAGAATGAAGCTAGCTGAAGAATTAGGGTTGCAACCTCGACAAGTTTCGATTTGGTTTCAAAATCGTCGAGCTCGATCGAAAACGAAACAATTGGAAAGAGATTATGGTGTTCTTAAGTCCAATTTTGATGTTCTTAAGGTTGAGTATAGTAATCTTCAACAAGAGAATCAAACTCTTACTATAAAGTTAAGAGAGTTGAAAGAGAGAATGTTGAGAGATGGAAGAAATGAGTTAGAAAAGGGAGGTTCATATAGCAATTCAAGTGATGTGATTAAGGAAGAAGGTGATGTTGATTGTTCAATGATAAATTTGGTTCATTACTATGATGATTCAAGAGGGTCTCATGAGAATGTGTTTCAGAATCAGTTTATGAGAATTGAGGAGCAGAATTTCTTTAGTAATGGTGAATTATTCAGTTTCTTTTCGGTTGATCAATCACCTACTTTGTAA 696 0.342 MEQNPYNKIKPFSIMLHYVGVEERNETKGYSEEFQAMLNRLEQEDSYEDGNIMLEKKRRLGYDQVKALEKSFELDNKLEPERRMKLAEELGLQPRQVSIWFQNRRARSKTKQLERDYGVLKSNFDVLKVEYSNLQQENQTLTIKLRELKERMLRDGRNELEKGGSYSNSSDVIKEEGDVDCSMINLVHYYDDSRGSHENVFQNQFMRIEEQNFFSNGELFSFFSVDQSPTL 231
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi3g03761 231 CDD homeodomain 56 112 IPR001356 GO:0003677
Vivi3g03761 231 Pfam Homeobox associated leucine zipper 111 152 IPR003106 GO:0006355|GO:0043565
Vivi3g03761 231 FunFam homeobox-leucine zipper protein ATHB-6-like 59 105 - -
Vivi3g03761 231 Gene3D - 61 109 - -
Vivi3g03761 231 ProSiteProfiles 'Homeobox' domain profile. 51 111 IPR001356 GO:0003677
Vivi3g03761 231 SUPERFAMILY Homeodomain-like 56 122 IPR009057 -
Vivi3g03761 231 Coils Coil 124 151 - -
Vivi3g03761 231 SMART HOX_1 54 115 IPR001356 GO:0003677
Vivi3g03761 231 ProSitePatterns 'Homeobox' domain signature. 86 109 IPR017970 GO:0000981|GO:0006355
Vivi3g03761 231 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 42 183 IPR045224 GO:0003700
Vivi3g03761 231 Pfam Homeodomain 57 109 IPR001356 GO:0003677
Vivi3g03761 231 PRINTS Lambda-repressor HTH signature 91 107 IPR000047 GO:0003677
Vivi3g03761 231 PRINTS Lambda-repressor HTH signature 82 91 IPR000047 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi3g03761 Vivi-Chr3 64075466 64076480 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi3g03761 21 165 Homeobox Transcription Factor Family AT5G65310 53.205 1.66e-47 157
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Vivi3g03761 Homeodomain 2.5e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi3g03761 K09338 - cave:132184564 214.927