Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi3g03760 ATGTCTTCTTTGCTTTCCATGTACCAATCCAAAGGTGTGGAAGAGAGGAATGAAACAAAGGGTTATAGTGAAGAATTTCAAGCAATGTTGAATAGATTGGAACAAGAAGATAGCTATGAAGATGGTAACATAATGTTGGAGAAGAAAAGAAGACTTGGTTATGATCAAGTGAAAGCTTTGGAAAAGAGTTTTGAGTTGGACAACAAGTTAGAGCCAGAGAGAAGAATGAAGCTAGCTGAAGAATTAGGGTTGCAACCTCGACAAGTTTCGATTTGGTTTCAAAATCGTCGAGCTCGATCGAAAACGAAACAATTGGAAAGAGATTATGGTGTTCTTAAGTCCAATTTTGATGTTCTTAAGGTTGAGTATAGTAATCTTCAACAAGAGAATCAAACTCTTACTATAAAGTTAAGAGAGTTGAAAGAGAGAATGTTGAGAGATGGAAGAAATGAGTTAGAAAAGGGAGGTTCATATAGCAATTCAAGTGATGTGATTAAGGAAGAAGGTGATGTTGATTGTTCAATGATAAATTTGGTTCATTACTATGATGATTCAAGAGGGTCTCATGAGAATGTGTTTCAGAATCAGTTTATGAGAATTGAGGAGCAGAATTTCTTTAGTAATGGTGAATTATTCAGTTTCTTTTCGGTTGATCAATCACCTACTTTGTAA 672 0.3497 MSSLLSMYQSKGVEERNETKGYSEEFQAMLNRLEQEDSYEDGNIMLEKKRRLGYDQVKALEKSFELDNKLEPERRMKLAEELGLQPRQVSIWFQNRRARSKTKQLERDYGVLKSNFDVLKVEYSNLQQENQTLTIKLRELKERMLRDGRNELEKGGSYSNSSDVIKEEGDVDCSMINLVHYYDDSRGSHENVFQNQFMRIEEQNFFSNGELFSFFSVDQSPTL 223
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi3g03760 223 FunFam homeobox-leucine zipper protein ATHB-6-like 51 97 - -
Vivi3g03760 223 CDD homeodomain 48 104 IPR001356 GO:0003677
Vivi3g03760 223 Pfam Homeobox associated leucine zipper 103 144 IPR003106 GO:0006355|GO:0043565
Vivi3g03760 223 SUPERFAMILY Homeodomain-like 48 114 IPR009057 -
Vivi3g03760 223 SMART HOX_1 46 107 IPR001356 GO:0003677
Vivi3g03760 223 ProSiteProfiles 'Homeobox' domain profile. 43 103 IPR001356 GO:0003677
Vivi3g03760 223 Coils Coil 116 143 - -
Vivi3g03760 223 MobiDBLite consensus disorder prediction 1 21 - -
Vivi3g03760 223 Pfam Homeodomain 49 101 IPR001356 GO:0003677
Vivi3g03760 223 PRINTS Lambda-repressor HTH signature 83 99 IPR000047 GO:0003677
Vivi3g03760 223 PRINTS Lambda-repressor HTH signature 74 83 IPR000047 GO:0003677
Vivi3g03760 223 Gene3D - 53 101 - -
Vivi3g03760 223 ProSitePatterns 'Homeobox' domain signature. 78 101 IPR017970 GO:0000981|GO:0006355
Vivi3g03760 223 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 31 176 IPR045224 GO:0003700
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi3g03760 Vivi-Chr3 64075185 64076477 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi3g03760 11 157 Homeobox Transcription Factor Family AT5G65310 53.165 3.66e-48 158
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Vivi3g03760 Homeodomain 2.3e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi3g03760 K09338 - cave:132184564 221.09