Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi3g03758 ATGGATGTAATCTTTGAAGTGCAAAAAGGAACACCATTCTCAATTGAAGTAGGTTTTTTCGACACTGTTTTGGAAATCAAAGAAAAAGTTCAAAAGTACCAAGGAATTCCAATCTCCAAACAAACCCTAATTTTCAATGGTAAAATTCTTCAAGACGATGGCGACATTTGGAAGTGCGAGATTTTTCAAAACTCCCGCATTAATCTAATAGTCGCCGCCGCAGATTCTGAGGATCCAAAAATACCAATAGCTCATGATAACAAATTTCACCTCAATGTGAAAACTCCTTCGTCCAAATCTCACATTCCTACGAAAATCGACAAAAACAATACCACTTCAAAGCTAAAAGAAAAAATTCACGACATTGATCAAAATAATGTCCCATTGAGAAAAGGCATGTTGCATGCAACCAAAACCAAATTGTCTGATAATAAGATCTTACGTGATTGTGATGTTTCAGAGAAGAGAAAAATTGGGGTGAGTTTTAAGACACAGGTATCGGCAGAACCTGCGATGGTTGGTGGCAGAGGCAGAGGAAGAGGAAGAGGAAGAGGAAGAGGAGCTTCGAAGAAGACACAGGTATCGGCAGAACCTGGGATGGTTGGTGGTAGAGGCAAAGGAAGAGGAGCTTCGAAGAAGTTGAAGCAGATGGTTTTGCCTAAAAGTGGAACAAAGAAAGCAGCTGTTGAAATGAACACTTCAGACAATCTTGGAGAATCGAGGAAATAA 729 0.3964 MDVIFEVQKGTPFSIEVGFFDTVLEIKEKVQKYQGIPISKQTLIFNGKILQDDGDIWKCEIFQNSRINLIVAAADSEDPKIPIAHDNKFHLNVKTPSSKSHIPTKIDKNNTTSKLKEKIHDIDQNNVPLRKGMLHATKTKLSDNKILRDCDVSEKRKIGVSFKTQVSAEPAMVGGRGRGRGRGRGRGASKKTQVSAEPGMVGGRGKGRGASKKLKQMVLPKSGTKKAAVEMNTSDNLGESRK 242
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi3g03758 242 ProSitePatterns Ubiquitin domain signature. 27 52 IPR019954 -
Vivi3g03758 242 SMART ubq_7 1 72 IPR000626 GO:0005515
Vivi3g03758 242 SMART ubq_7 89 163 IPR000626 GO:0005515
Vivi3g03758 242 Gene3D - 77 162 - -
Vivi3g03758 242 PANTHER UV EXCISION REPAIR PROTEIN RAD23 93 191 - -
Vivi3g03758 242 FunFam Ubiquitin-like superfamily protein 1 72 - -
Vivi3g03758 242 Gene3D - 1 70 - -
Vivi3g03758 242 ProSiteProfiles Ubiquitin domain profile. 1 76 IPR000626 GO:0005515
Vivi3g03758 242 ProSiteProfiles Ubiquitin domain profile. 89 158 IPR000626 GO:0005515
Vivi3g03758 242 Pfam Ubiquitin family 6 71 IPR000626 GO:0005515
Vivi3g03758 242 MobiDBLite consensus disorder prediction 172 242 - -
Vivi3g03758 242 SUPERFAMILY Ubiquitin-like 1 73 IPR029071 -
Vivi3g03758 242 SUPERFAMILY Ubiquitin-like 86 157 IPR029071 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi3g03758 Vivi-Chr3 63961632 63962360 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi3g03758 1 71 Cytoplasmic Ribosomal Protein Gene Family AT3G52590 32.394 7.91e-06 42.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi3g03758 - - psat:127097496 272.707