Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi3g03696 ATGGATTTTGAAACTGAATCTGATGTTGGTGTTGTGGAGAAAGATCCAACTTTGCGTTACGCACGATATGATGAAATGTTAGGGAAAGGAGCTTTTAAGACTGTGTATAAAGCTTTTGATGAAGTAGATGGAATAGAAGTTGCTTGGAACCGAATTTGTATAGAGGATGTTATGCAATTACCCGAAAATTTGGAGAAGTTGTATTCTGAGGTTCATCTCCTTAAGTCACTGAAACATGAAAATATTATTAAGTTGTATAGCTCTTGGGTGGATGAAAAGACTAGGACTATCAACATGATTACTGAGTTGTTTACTTCTGGGAGTTTGCGGCAGTATAGGAAAAAACATAAGAATGTGGATATGAAAGCTATCAAGAACTGGGCGAGGCAGATTCTTCGTGGCTTGTGCTTTCTGCACAGTCATAATCCTCCTGTTATTCACAGGGATCTTAAATGCGATAACATTTTTGTTAACGGGAACAATGGGCAAGTTAAGATTGGAGATCTCGGATTGGCAATTATCATGCAGCAACCTACTGCCCGGAGTGTTATTGGTACTCCAGAATTCATGGCTCCTGAGCTTTATGAGGAAGAATATAATGAACTTGTTGACATATATTCCTTTGGCATGTGTATCTTGGAAATGATCACCTGTGAGTACCCGTATAGTGAATGCAAAAATCCGGCGCAGATATATAAGAAAGTTACCTCTGGTGTAAAGCCTGCTGCTCTTGCTAAAGTGAATGATCCTGAAGTGAAGCAATTTATAGAAAAGTGTTTAGTTCCAGCATCTATAAGATTGCCTGCATCTGAATTGCTGAAAGACCCATTCCTCGCAACTGGAAACACAAAGATCTATCATGATACCCCGCTGCTGCTTAGTCCCCCCATCAAATCAATGAATCCACCAGCATGTGAGCCCCATCCCATGGAGATAGATTCAAACCCCGGGCATACACCACCTGGCTCCTCTGTGGAAGGGATTAAAGAAACTTCCCAAGTTTCAATACTTGATCTCCATAGGAAGACAGAGAACAATGAATTTTGGTTAAGAGGGGAGAAGAATGCCGATCGTACAATTTCACTTACACTACGAATTGCTGATTCTGATGGTGGAGTTAGGAATATCCATTTTCCATTTTATATCGATTCCGACACCACAATTTCAATTGCCGAGGAAATGGTGGAACATCTGGAACTCAAGGATGAGGATGTAGCTGTCATTGCTGAGCTTATACACAACATGATTTTCGAGCTTGTGCCTGACTGGAAACCCGTGTGTAATAACCTCTCATCTGGAACAGATAATTTGTACAGGCCTTCGGAAGCTCAGAATGATGGACAGTTAAACTGCCATTGGACATTGGGATCAGATGGTTTTGATATGAAGGCAATGTATGAGGATTTAGATCAGTCACAGCGTGATGGGGAAGATCAGGACAAACAAGAATCTGTTACATCAGATATTTCAGCTGAGTATGGGGTTGCAATTGCCACTGATTCTGGAGGTATAGAGCCTGATTGTTTTATTCTTCATGAATGTTGCAAGGGGTCCAATGGTTTAAATTCCAATTCAGATGTCAGGATTTATGGTCAAGAAGACGGAAACAATAATCAATCAGAGAACTCAATCTCAAGTTACATGTCAAGCAAATGTTCTCTTGACAATGATCATTTAAACGGGCTACAGTTGGAGCTTGAAGCAATTGAAACCCAGTATCAGCAAAGTTTTCGTGAGCTTTTGAAGATGAGGGAGGATGCCATAGAAAATGCGAAAAAGAGATGGATTTCAAAGAAGAATACATAG 1806 0.4037 MDFETESDVGVVEKDPTLRYARYDEMLGKGAFKTVYKAFDEVDGIEVAWNRICIEDVMQLPENLEKLYSEVHLLKSLKHENIIKLYSSWVDEKTRTINMITELFTSGSLRQYRKKHKNVDMKAIKNWARQILRGLCFLHSHNPPVIHRDLKCDNIFVNGNNGQVKIGDLGLAIIMQQPTARSVIGTPEFMAPELYEEEYNELVDIYSFGMCILEMITCEYPYSECKNPAQIYKKVTSGVKPAALAKVNDPEVKQFIEKCLVPASIRLPASELLKDPFLATGNTKIYHDTPLLLSPPIKSMNPPACEPHPMEIDSNPGHTPPGSSVEGIKETSQVSILDLHRKTENNEFWLRGEKNADRTISLTLRIADSDGGVRNIHFPFYIDSDTTISIAEEMVEHLELKDEDVAVIAELIHNMIFELVPDWKPVCNNLSSGTDNLYRPSEAQNDGQLNCHWTLGSDGFDMKAMYEDLDQSQRDGEDQDKQESVTSDISAEYGVAIATDSGGIEPDCFILHECCKGSNGLNSNSDVRIYGQEDGNNNQSENSISSYMSSKCSLDNDHLNGLQLELEAIETQYQQSFRELLKMREDAIENAKKRWISKKNT 601
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi3g03696 601 ProSitePatterns Serine/Threonine protein kinases active-site signature. 145 157 IPR008271 GO:0004672|GO:0006468
Vivi3g03696 601 SUPERFAMILY Protein kinase-like (PK-like) 24 321 IPR011009 -
Vivi3g03696 601 SMART serkin_6 21 278 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi3g03696 601 Pfam Oxidative-stress-responsive kinase 1 C-terminal domain 360 416 IPR024678 GO:0004674|GO:0005524
Vivi3g03696 601 Pfam Protein kinase domain 24 278 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi3g03696 601 Coils Coil 559 586 - -
Vivi3g03696 601 Gene3D Transferase(Phosphotransferase) domain 1 104 285 - -
Vivi3g03696 601 FunFam probable serine/threonine-protein kinase WNK9 104 283 - -
Vivi3g03696 601 ProSiteProfiles Protein kinase domain profile. 21 278 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi3g03696 601 Gene3D Phosphorylase Kinase; domain 1 4 102 - -
Vivi3g03696 601 CDD STKc_WNK 19 278 - -
Vivi3g03696 601 PANTHER SERINE/THREONINE-PROTEIN KINASE WNK WITH NO LYSINE -RELATED 8 579 - -
Vivi3g03696 601 FunFam Probable serine/threonine-protein kinase WNK1 5 102 - -
Vivi3g03696 601 Gene3D - 358 451 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi3g03696 Vivi-Chr3 62704282 62707497 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi3g03696 12 599 MAP Kinase Kinase Kinase AT5G41990 53.846 0.0 580
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK WNK_NRBP Vivi3g03696 Pkinase 1.1e-51 CL0016