Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi3g03681 ATGAATATAAGAAAGAATGATATGATGATGAGTAGTGTTCAACAAACTGCAAATTCTTCTCCTCCTCCTCCACATATGTATCCAGAAGAACTTCAACTTAAGCTTTATCAAGCTTTTATATTTTCAATTCCTATACTTTTTTCTATTATTCTTTTTCTTCTATTTTACTTGTTTTATCTCAAGAGAAGAGCTTCTTCTTTCTCTCCACACTTGCTTCCAAGGATTAATCCTCCAACTACCTATCGTTATTATTCCTCTAATTCCTCACCTCGTCGTTTGGATTTTGCTGTGCAATTCTTGGACAAACTTCCTAGAGTTTTGTTTGATGAGGATTTACAAGCTAGGGATTCAGTATGTTGTGTATGTTTGGGAGAATTTGAGTTGAAAGAAGAGTTGCAACAGATTCCATATTGCAAGCATGTGTTCCACATTGATTGCATACATCATTGGCTACAAACAAATTCAACTTGTCCACTTTGTAGATGTTCCATCATTCCCACTACTACCAAGTTCCTTGATCCACCACCTCCTATTAATGTTATTATATCAGACCCACCACATCAAGGTCCTATCAATTCTGATTCTCCATTACAAATTTCATCATTAGAAGATGAACCTGTTGGTGCTTCCACAACTGTTGTGTCAAGAGAATGA 654 0.3578 MNIRKNDMMMSSVQQTANSSPPPPHMYPEELQLKLYQAFIFSIPILFSIILFLLFYLFYLKRRASSFSPHLLPRINPPTTYRYYSSNSSPRRLDFAVQFLDKLPRVLFDEDLQARDSVCCVCLGEFELKEELQQIPYCKHVFHIDCIHHWLQTNSTCPLCRCSIIPTTTKFLDPPPPINVIISDPPHQGPINSDSPLQISSLEDEPVGASTTVVSRE 217
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi3g03681 217 ProSiteProfiles Zinc finger RING-type profile. 119 161 IPR001841 -
Vivi3g03681 217 MobiDBLite consensus disorder prediction 1 20 - -
Vivi3g03681 217 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 81 166 IPR013083 -
Vivi3g03681 217 MobiDBLite consensus disorder prediction 183 217 - -
Vivi3g03681 217 MobiDBLite consensus disorder prediction 186 217 - -
Vivi3g03681 217 Pfam Ring finger domain 119 161 IPR001841 -
Vivi3g03681 217 PANTHER RING-H2 FINGER PROTEIN ATL16 14 186 IPR044600 GO:0016567|GO:0016740
Vivi3g03681 217 FunFam Putative E3 ubiquitin-protein ligase RHA4A isoform A 88 166 - -
Vivi3g03681 217 CDD RING-H2_EL5-like 119 161 - -
Vivi3g03681 217 SUPERFAMILY RING/U-box 97 168 - -
Vivi3g03681 217 SMART ring_2 119 160 IPR001841 -
Vivi3g03681 217 MobiDBLite consensus disorder prediction 1 24 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi3g03681 Vivi-Chr3 62345315 62347255 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi3g03681 18 166 C3H Transcription Factor Family AT4G10150 40.523 1.92e-34 121
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi3g03681 K19039 - gmx:100794298 258.455