Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi3g03664 ATGGACAAAGAAGGTGTTGAACTTCAAACTGATGCAGTTTCAATCATCACAGATTCTTCTCTTCTTCATCACCAGGTTTCAAGAAGACCTAGTCTTTCCTCTTTACAGATACCAACAAGGTCACTTGAAAGTGCATTATCTTCTTCTACTAAGACAGATGGTCCTACATTATCAAGTCCGGGTTCCACTAGAGGACTGCCACCAAGGCCACATTCTACCAAAGTCAAATCCTCTATGAGAAATTTGCTTTCTGATAGGAGCTTTAGGACAAAAACTTGTTCGCAAGATTCTGAAAAGACGGTTTTGATTGTTCCTGATACTTTATCATCAGATGGTCCTTTGGATAAGCCTTCTACTTCGAGATCGCTTTCACTTAACAAGATTTTGTTCCCTTCATCGACAAAAGCTGCACATTCGTTGCCGGTTACTCCAATTGCAAATTCAGATGCAGATAATGTAAATGGAAGACATGCCGAGGGTGATTCTGATTTGAATAAAGTGAAAGTGAATAAGCATATGACTCGATCATTTTCAGTTCCGGTTAATGTTAAAGCAGCTAATTTAAGGCCTACAGATTCGAGGCGCCTGGTTCGTGTAATTTCAGCAAGACCACATACAGCAACTACCGATGGCATTTCAACTCGCAGTGATTCAATGCAAGAGATTGTCATTGAAGATGCTTCTGAGGATATTCCAGAAGAAGAAGCAGTTTGTAGGATTTGTTTGGTGGAGCTTACGGAAGGGGGAGATACTCTTAGGATGGACTGCAGTTGTAAAGGCGAACTTGCACTTGCTCACCAAGACTGTGCAGTAAAGTGGTTTAGTATCAAAGGAAATAAGACTTGTGATGTATGCAAGCAGGATGTCCGGAACCTTCCAGTAACACTTTTAAAAATTCCTAATCCTCCAACTGTTGTTCGACATCCATTGAATGCATCGCAGCAGAGAGAAGTAGCTAATTACAGGATCTGGCAGGATGTACCGGTACTTGTCTTGGTCAGCACACTTGCATACTTTTGCTTTCTTGAGGAACTACTGGTTTCGGATTTGGGTCCACGTGCTCTCGCCATTTCTTTGCCTTTCTCATGCATTTTAGGTCTCCTTTCATCTCTAATTGCCTCAAGCATGGTGAGCCGGAGTTACATATGGGCGTATGCATGCTTCCAGTTTGCATTTGTCATTCTGTTTGCTCATGTATTCTATTCAATACTTAATGTTGCTGCAATATTCTCGGTTCTTCTTTCAACATTCACCGGATTCGGGATTTCAATCAGCGTGAATTCTCTCTTAATGGAATATATTAGATGGAAAACAAGTAGACAGATTCAATCTTCTAATCAAAATATCATTTCTAGACAGCAGCAGCACCACCAAGAACATCAACAGCACCAATGA 1395 0.41 MDKEGVELQTDAVSIITDSSLLHHQVSRRPSLSSLQIPTRSLESALSSSTKTDGPTLSSPGSTRGLPPRPHSTKVKSSMRNLLSDRSFRTKTCSQDSEKTVLIVPDTLSSDGPLDKPSTSRSLSLNKILFPSSTKAAHSLPVTPIANSDADNVNGRHAEGDSDLNKVKVNKHMTRSFSVPVNVKAANLRPTDSRRLVRVISARPHTATTDGISTRSDSMQEIVIEDASEDIPEEEAVCRICLVELTEGGDTLRMDCSCKGELALAHQDCAVKWFSIKGNKTCDVCKQDVRNLPVTLLKIPNPPTVVRHPLNASQQREVANYRIWQDVPVLVLVSTLAYFCFLEELLVSDLGPRALAISLPFSCILGLLSSLIASSMVSRSYIWAYACFQFAFVILFAHVFYSILNVAAIFSVLLSTFTGFGISISVNSLLMEYIRWKTSRQIQSSNQNIISRQQQHHQEHQQHQ 464
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi3g03664 464 SUPERFAMILY RING/U-box 234 289 - -
Vivi3g03664 464 MobiDBLite consensus disorder prediction 27 91 - -
Vivi3g03664 464 MobiDBLite consensus disorder prediction 74 91 - -
Vivi3g03664 464 SMART ringv_2 237 286 IPR011016 GO:0008270
Vivi3g03664 464 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 224 293 IPR013083 -
Vivi3g03664 464 ProSiteProfiles Zinc finger RING-CH-type profile. 230 292 IPR011016 GO:0008270
Vivi3g03664 464 MobiDBLite consensus disorder prediction 27 66 - -
Vivi3g03664 464 PANTHER OS02G0165000 PROTEIN 24 455 - -
Vivi3g03664 464 CDD RING_CH-C4HC3_MARCH 238 286 - -
Vivi3g03664 464 Pfam RING-variant domain 238 285 IPR011016 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi3g03664 Vivi-Chr3 62156524 62159507 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi3g03664 232 292 C3H Transcription Factor Family AT2G37950 48.387 7.88e-14 68.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi3g03664 - - gmx:100779396 613.609