Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi3g03646 ATGAGAACAAAAAGCGTCAGCGTTGGCCGCCGGCGTAGCATTACGTCTTCCGTGACTCCCTCCGCCTCTCCCATTCCTCTCCTCTCCACCGTCCAGGACAACCACAACGCAACCGTCTACGACAGCGACAGCACCGGCGATCACACACATGCCGCACCACTTCCCAATTTCGTTCCCGATTCCGAACCACCAGATTCCTTTGACGATAACATTTGCATTACCTGCAACCGAGCCGGAGGACCGTTGCTAGTATGTACCCAAACGGATTGCCCCGTTGTAGTCCACGTCACCTGCATCGGTTCCGAACCTAAGTTCGATGATTCTGGAAACTTTTTCTGTCCTTACTGCTCCTACAAGCGAGCGTTGAAGAGAACTAGAGAATTAAGAGAAAAAGCGATTCTAGCGAAGAAAGCTCTTTCGAGCTTTTTGGAAAAAAGCCAAACAGTGCGTAAGGATGATGATGAAGAAGAAGAACACATTGCCGAACCAGAACCGGTTCAACCGGTTCAGGTTCAGGATGAACCGAACCATAATGAACCAGAACCGGTTCAAGTTGAACCGAACCGGAACGAACCAGAACCGGTTCAACCGGTTCAGGATGAACAGGATGTTTCTGATTCTGAGGAAAGAAGAGAACTAAATAGTAATGAAAATGATAAAGTTGAAGATAAAGGAAAGGTTTCTGTTTCAGGTAGTTCTGTCAGTGAAGCTAAAAATTCCGACTCGAATTCTGTCTCAGTGAAGAAAGGTCATGTCAATGCCAATGCCAAAGGCAAACGCAAGGTTGCTTATGTGAAAAAATCATTGCTACCGGAACGAAAAACTGGTGGTGCTGGTGGTGGTAGTGGCGGTGGTGATGGCGTGGATGAGGAGGAAGTTACCAGCTCTAGAACTTTTAGTGTACAAAAGCAAGTGTCGAAGCAGAATTTGATAACTGGAAAACGTAGGAGATTGCTTTGGACCGATGAAGAAGAAAAAGCTCTCAAGGAAGGAGTGTTGAAGTATTCAACTGAAAAGCAGAATATCCCTTGGAGGAAAATTTTAGAATTTGGTTGTCGTGTGTTTGATAAGACTCGGACTCCTGTTGATCTCAAGGATAAATGGAAGAACATTATCTCCAAAGAAGGTAAAATTACTAAGTTATAA 1146 0.452 MRTKSVSVGRRRSITSSVTPSASPIPLLSTVQDNHNATVYDSDSTGDHTHAAPLPNFVPDSEPPDSFDDNICITCNRAGGPLLVCTQTDCPVVVHVTCIGSEPKFDDSGNFFCPYCSYKRALKRTRELREKAILAKKALSSFLEKSQTVRKDDDEEEEHIAEPEPVQPVQVQDEPNHNEPEPVQVEPNRNEPEPVQPVQDEQDVSDSEERRELNSNENDKVEDKGKVSVSGSSVSEAKNSDSNSVSVKKGHVNANAKGKRKVAYVKKSLLPERKTGGAGGGSGGGDGVDEEEVTSSRTFSVQKQVSKQNLITGKRRRLLWTDEEEKALKEGVLKYSTEKQNIPWRKILEFGCRVFDKTRTPVDLKDKWKNIISKEGKITKL 381
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi3g03646 381 SMART PHD_3 71 117 IPR001965 -
Vivi3g03646 381 MobiDBLite consensus disorder prediction 1 22 - -
Vivi3g03646 381 Gene3D - 310 373 - -
Vivi3g03646 381 ProSiteProfiles Myb-like domain profile. 312 372 IPR001005 -
Vivi3g03646 381 SUPERFAMILY Homeodomain-like 315 373 IPR009057 -
Vivi3g03646 381 SMART sant 316 374 IPR001005 -
Vivi3g03646 381 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 60 161 IPR013083 -
Vivi3g03646 381 CDD PHD_SF 71 116 - -
Vivi3g03646 381 ProSitePatterns Zinc finger PHD-type signature. 72 116 IPR019786 -
Vivi3g03646 381 ProSiteProfiles Zinc finger PHD-type profile. 69 119 IPR019787 -
Vivi3g03646 381 MobiDBLite consensus disorder prediction 203 226 - -
Vivi3g03646 381 Pfam Myb-like DNA-binding domain 320 371 IPR001005 -
Vivi3g03646 381 MobiDBLite consensus disorder prediction 8 22 - -
Vivi3g03646 381 CDD SANT_TRF 320 372 - -
Vivi3g03646 381 PANTHER RING/FYVE/PHD ZINC FINGER SUPERFAMILY PROTEIN 56 375 - -
Vivi3g03646 381 MobiDBLite consensus disorder prediction 228 250 - -
Vivi3g03646 381 MobiDBLite consensus disorder prediction 144 306 - -
Vivi3g03646 381 SUPERFAMILY FYVE/PHD zinc finger 61 124 IPR011011 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi3g03646 Vivi-Chr3 61674211 61676726 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi3g03646 320 371 Single Myb Histone (SMH) Gene Family AT5G67580 56.364 4.74e-08 52.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Vivi3g03646 Myb_DNA-binding 9.9e-07 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi3g03646 - - vvo:131655918 692.96