Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi3g03645 ATGAGAACAAAAAGCGTCAGCGTTGGCCGCCGGCGTAGCATTACGTCTTCCGTGACTCCCTCCGCCTCTCCCATTCCTCTCCTCTCCACCGTCCAGGACAACCACAACGCAACCGTCTACGACAGCGACAGCACCGGCGATCACACACATGCCGCACCACTTCCCAATTTCGTTCCCGATTCCGAACCACCAGATTCCTTTGACGATAACATTTGCATTACCTGCAACCGAGCCGGAGGACCGTTGCTAGTATGTACCCAAACGGATTGCCCCGTTGTAGTCCACGTCACCTGCATCGGTTCCGAACCTAAGTTCGATGATTCTGGAAACTTTTTCTGTCCTTACTGCTCCTACAAGCGAGCGTTGAAGAGAACTAGAGAATTAAGAGAAAAAGCGATTCTAGCGAAGAAAGCTCTTTCGAGCTTTTTGGAAAAAAGCCAAACAGTGCGTAAGGATGATGATGAAGAAGAAGAACACATTGCCGAACCAGAACCGGTTCAACCGGTTCAGGTTCAGGATGAACCGAACCATAATGAACCAGAACCGGTTCAAGTTGAACCGAACCGGAACGAACCAGAACCGGTTCAACCGGTTCAGGATGAACAGGATGTTTCTGATTCTGAGGAAAGAAGAGAACTAAATAGTAATGAAAATGATAAAGTTGAAGATAAAGGAAAGGTTTCTGTTTCAGGTAGTTCTGTCAGTGAAGCTAAAAATTCCGACTCGAATTCTGTCTCAGTGAAGAAAGGTCATGTCAATGCCAATGCCAAAGGCAAACGCAAGGTTGCTTATGTGAAAAAATCATTGCTACCGGAACGAAAAACTGGTGGTGCTGGTGGTGGTAGTGGCGGTGGTGATGGCGTGGATGAGGAGGAAGTTACCAGCTCTAGAACTTTTAGTGTACAAAAGCAAGTGTCGAAGCAGAATTTGATAACTGGAAAACGTAGGAGATTGCTTTGGACCGATGAAGAAGAAAAAGCTCTCAAGGAAGGAGTGTTGAAGTATTCAACTGAAAAGCAGAATATCCCTTGGAGGAAAATTTTAGAATTTGGTTGTCGTGTGTTTGATAAGACTCGGACTCCTGTTGATCTCAAGGATAAATGGAAGAACATTATCTCCAAAGAAGATAAAGGATTTTGCAAAAATGAGAATGAAAGATGTGGCCTTTGCTTATGCAATATTTTTTGCATTTTGTTGGAGAAAGAACATGCACATTTTTAG 1221 0.4455 MRTKSVSVGRRRSITSSVTPSASPIPLLSTVQDNHNATVYDSDSTGDHTHAAPLPNFVPDSEPPDSFDDNICITCNRAGGPLLVCTQTDCPVVVHVTCIGSEPKFDDSGNFFCPYCSYKRALKRTRELREKAILAKKALSSFLEKSQTVRKDDDEEEEHIAEPEPVQPVQVQDEPNHNEPEPVQVEPNRNEPEPVQPVQDEQDVSDSEERRELNSNENDKVEDKGKVSVSGSSVSEAKNSDSNSVSVKKGHVNANAKGKRKVAYVKKSLLPERKTGGAGGGSGGGDGVDEEEVTSSRTFSVQKQVSKQNLITGKRRRLLWTDEEEKALKEGVLKYSTEKQNIPWRKILEFGCRVFDKTRTPVDLKDKWKNIISKEDKGFCKNENERCGLCLCNIFCILLEKEHAHF 406
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi3g03645 406 SMART PHD_3 71 117 IPR001965 -
Vivi3g03645 406 MobiDBLite consensus disorder prediction 1 22 - -
Vivi3g03645 406 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 312 376 IPR017930 -
Vivi3g03645 406 ProSiteProfiles Myb-like domain profile. 312 372 IPR001005 -
Vivi3g03645 406 MobiDBLite consensus disorder prediction 144 300 - -
Vivi3g03645 406 SMART sant 316 374 IPR001005 -
Vivi3g03645 406 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 60 161 IPR013083 -
Vivi3g03645 406 PANTHER RING/FYVE/PHD ZINC FINGER SUPERFAMILY PROTEIN 56 375 - -
Vivi3g03645 406 CDD PHD_SF 71 116 - -
Vivi3g03645 406 SUPERFAMILY Homeodomain-like 315 378 IPR009057 -
Vivi3g03645 406 ProSitePatterns Zinc finger PHD-type signature. 72 116 IPR019786 -
Vivi3g03645 406 SUPERFAMILY FYVE/PHD zinc finger 61 124 IPR011011 -
Vivi3g03645 406 ProSiteProfiles Zinc finger PHD-type profile. 69 119 IPR019787 -
Vivi3g03645 406 MobiDBLite consensus disorder prediction 203 226 - -
Vivi3g03645 406 Gene3D - 320 389 - -
Vivi3g03645 406 MobiDBLite consensus disorder prediction 8 22 - -
Vivi3g03645 406 CDD SANT_TRF 320 372 - -
Vivi3g03645 406 Pfam Myb-like DNA-binding domain 320 371 IPR001005 -
Vivi3g03645 406 MobiDBLite consensus disorder prediction 228 250 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi3g03645 Vivi-Chr3 61674210 61676726 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi3g03645 320 371 Single Myb Histone (SMH) Gene Family AT5G67580 56.364 4.88e-08 52.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Vivi3g03645 Myb_DNA-binding 1.1e-06 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi3g03645 - - vvo:131655918 761.911