Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi3g03644 ATGAAAAGGGCTATCTCGGTGGGATCATTAGAGGGAAGAGGTGTGATAGAACTCGAAAACGCGATTCTACTAAATCCTTCTTTATTTCCTAGAAAAGTTGCATCATATGAAGAAGATTCACCAATTGATCACGAGTGTGGGAAATTTTCACCAAATATAATAAGAAGTAAAGTTCTTAGTAGCATAAAAGTTGTAGTCCTTTCAACCAAGATAAACTTGCTTATGCCTTTTGGTCCTATGGCCATTTTGGTAGATAGATTGTTCCATAGTCATGGTTGGGTTTTTGTGTTCAGCTTATTAGGTATTATACCCTTGGCCGAGCGTTTGGGCTATACAACCGAGCAGCTAGCCCTCTTTACTGGACCGGCAGTTGGTGGTTTATTATATGCAACATTTGGAAATGCAACAGAGTTAATCATATCAATTCACGCACTCAAAAGTGGTTTGATTCGTCTTGTTCAACAATCGCTACTAGGCTCGATTCTGTCTAACCTGTTGCTACAGAAATTGACGTTAACTTATCATCAGGCAGATACTAGTGTGGATTTCGGATTACTATTGATGGCGGTGATGGGACTGTTATTTCCAGCAGTTCTCCATGCTACACAAACAGAATTAGAATATGGGAAATCTCAGTTATCTCTTTCAAGATTTACCAGTTGCATTATGCTTGTGGCATATGCTTCATATATAGTGTTTCAATTCAAGAGTCAGAAGAATTTGGAACTTCCAGTTTACGAGGACAAGAGTTTCGACGAAGATGCTTCGAATGATGCTGAAGCTCCTGAGATTTCGATGTGGGAATCAATGATATGGATTTCGATCTTAACAGGAGGTATATCTATCTTGTCAGAATACTTGGTTAAAACCATAGAGGGGGCATCAAAAGAGTTTCAAATGCCTGTGTCATTTCTTAGTGTTATTCTTCTTCCAGTAGTAGGGAATGCTGCAGAACATGTTGGATCTGTTATGTTTGCTATCAAAGACAAACTTGATATATCGCTGGCCGTAGCTGTTGGATCTTCAATACAAATATCAATGTTTATGATTCCATTTTGCGTGGTTGTTGGATGGATAATTGGATGCCCTATGGACTTAAATTTTCTGCCATTTGAAACAACTTCTCTTTTCATGTCAGTTATCATAGTTGCCTTCATGTTGCAAAATGGAACTTCAAACTACTTCAAAGGAATAGTGCTCATTCTTTGCTATTTGATAGTTTCTGCAAGTTATTTTGAACATATTGATCCTATGTCAGTTGGTGAGTTATGA 1272 0.3797 MKRAISVGSLEGRGVIELENAILLNPSLFPRKVASYEEDSPIDHECGKFSPNIIRSKVLSSIKVVVLSTKINLLMPFGPMAILVDRLFHSHGWVFVFSLLGIIPLAERLGYTTEQLALFTGPAVGGLLYATFGNATELIISIHALKSGLIRLVQQSLLGSILSNLLLQKLTLTYHQADTSVDFGLLLMAVMGLLFPAVLHATQTELEYGKSQLSLSRFTSCIMLVAYASYIVFQFKSQKNLELPVYEDKSFDEDASNDAEAPEISMWESMIWISILTGGISILSEYLVKTIEGASKEFQMPVSFLSVILLPVVGNAAEHVGSVMFAIKDKLDISLAVAVGSSIQISMFMIPFCVVVGWIIGCPMDLNFLPFETTSLFMSVIIVAFMLQNGTSNYFKGIVLILCYLIVSASYFEHIDPMSVGEL 423
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi3g03644 423 FunFam Vacuolar cation/proton exchanger 257 413 - -
Vivi3g03644 423 NCBIfam calcium/proton exchanger 75 412 IPR004798 GO:0006816|GO:0015369
Vivi3g03644 423 Pfam Sodium/calcium exchanger protein 93 235 IPR004837 GO:0016020|GO:0055085
Vivi3g03644 423 Pfam Sodium/calcium exchanger protein 271 407 IPR004837 GO:0016020|GO:0055085
Vivi3g03644 423 NCBIfam calcium/proton exchanger 58 411 - -
Vivi3g03644 423 Gene3D - 122 245 IPR044880 -
Vivi3g03644 423 Gene3D - 255 411 IPR044880 -
Vivi3g03644 423 PANTHER VACUOLAR CALCIUM ION TRANSPORTER 55 417 IPR004713 GO:0006812|GO:0008324|GO:0016020
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi3g03644 Vivi-Chr3 61641767 61644283 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi3g03644 31 417 Antiporters AT1G55730 60.050 2.05e-169 480
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi3g03644 K07300 - jre:109000743 498.819