Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi3g03635 ATGAATGCTCTTCTTCGTTGCATGATTTCTCTTGTATTACTCTTTTCTCTTCAGGTAAATCCTTGTTATTGCTTCAAAAGGAATCCATTTAACGTTTCTCATTTTGAAAAGGATGATGATGATAAATGGAAAATGGGAAAAGCTACACATTATGGACCTCCAAATGGTGCTGGATCAACAGGAGGTGCATGTGGATATGGTGATACTGTTGAAAAACATCCTTTTGATAAAATGACATCGGCTGCTGGTGGATCTATTTACCGTGGGGGAAAAGGTTGTGGTTCTTGTTATAAGGTGAAATGCACAGAACATAAAGAATGTTCCGAAAAATCGGTGAGAGTGGTTATAAGTGATGAATGTGGAGGATGTAATGAGGGTCATTTCGATCTAAGTTGCACTGCCTTTGGTCGCCTTGCCAAAAAAGGCCAAGGCCATGTTAAAAATCTTCTCGATGCTGGAGATATTAAGATTCAGTACAAGAGGGTTGCATGCACGTTTTGGAGGACAATAGCATTTGAAACTGATAAAGGAGCCAACCCATATCATTTTATTGTTCAAATACAATACCAAAATGGATATGGTGACATTGAAAAAGTTGAATTGAAGGAAGGACATGGATCAAAAAAATGGCTTCCAATGCAACATTCTTGGGGTGCAAGATGGTTTTTGAGCAATAATGGTGTAGAGCTGAAACCTCCATATTCTATTAAGCTCACACAAAGTGCAAATGGAAAATCCAAGACCTTTAAAGCTCGTAAAGTCATTCCAAAAAATTGGAAACCTGGCAAAGTTTATTGGGCACGTTCTAATTTATAG 816 0.3799 MNALLRCMISLVLLFSLQVNPCYCFKRNPFNVSHFEKDDDDKWKMGKATHYGPPNGAGSTGGACGYGDTVEKHPFDKMTSAAGGSIYRGGKGCGSCYKVKCTEHKECSEKSVRVVISDECGGCNEGHFDLSCTAFGRLAKKGQGHVKNLLDAGDIKIQYKRVACTFWRTIAFETDKGANPYHFIVQIQYQNGYGDIEKVELKEGHGSKKWLPMQHSWGARWFLSNNGVELKPPYSIKLTQSANGKSKTFKARKVIPKNWKPGKVYWARSNL 271
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi3g03635 271 SMART dpbb_1 79 150 IPR007112 -
Vivi3g03635 271 SUPERFAMILY Barwin-like endoglucanases 41 166 IPR036908 -
Vivi3g03635 271 Pfam Lytic transglycolase 80 147 IPR009009 -
Vivi3g03635 271 Pfam Expansin C-terminal domain 170 256 IPR007117 -
Vivi3g03635 271 PRINTS Major pollen allergen Lol pI signature 188 203 IPR005795 GO:0005576|GO:0019953
Vivi3g03635 271 PRINTS Major pollen allergen Lol pI signature 141 156 IPR005795 GO:0005576|GO:0019953
Vivi3g03635 271 PRINTS Major pollen allergen Lol pI signature 101 111 IPR005795 GO:0005576|GO:0019953
Vivi3g03635 271 PRINTS Major pollen allergen Lol pI signature 172 187 IPR005795 GO:0005576|GO:0019953
Vivi3g03635 271 PRINTS Major pollen allergen Lol pI signature 243 260 IPR005795 GO:0005576|GO:0019953
Vivi3g03635 271 PRINTS Major pollen allergen Lol pI signature 81 92 IPR005795 GO:0005576|GO:0019953
Vivi3g03635 271 Gene3D - 167 271 IPR036749 -
Vivi3g03635 271 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 181 267 IPR007117 -
Vivi3g03635 271 PANTHER EXPANSIN-B3 15 267 - -
Vivi3g03635 271 PRINTS Expansin/Lol pI family signature 210 224 IPR007118 GO:0005576
Vivi3g03635 271 PRINTS Expansin/Lol pI family signature 83 101 IPR007118 GO:0005576
Vivi3g03635 271 PRINTS Expansin/Lol pI family signature 152 168 IPR007118 GO:0005576
Vivi3g03635 271 PRINTS Expansin/Lol pI family signature 60 78 IPR007118 GO:0005576
Vivi3g03635 271 PRINTS Expansin/Lol pI family signature 42 57 IPR007118 GO:0005576
Vivi3g03635 271 Gene3D - 29 165 IPR036908 -
Vivi3g03635 271 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 61 164 IPR007112 -
Vivi3g03635 271 SUPERFAMILY PHL pollen allergen 169 266 IPR036749 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi3g03635 Vivi-Chr3 61363942 61365011 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi3g03635 20 271 Expansin Gene Family AT1G65680 45.882 1.29e-73 224
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi3g03635 - - psat:127079935 474.167